Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1997 145 8e-30 seq916 107 2e-18 seq3609 104 2e-17 seq2657 96.9 3e-15 seq5958 87.8 2e-12 >seq1997 Length=17169 Score = 145 bits (160), Expect = 8e-30 Identities = 497/757 (66%), Gaps = 27/757 (4%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||||| || |||| ||||||| |||||||||| || || ||| ||||||| | Sbjct 6270 ACGAGCGCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCA 6211 Query 52153 ACATTAACCTCATCGAGTACATGCAGCG--GAACGTTCCGGAACTCGAGGCGCAATACTT 52210 || ||||| | | || | ||| ||| || | | | |||||||| || ||| Sbjct 6210 ACGAAAACCTGGCCATGAACTTT-AGCAATGAA-GTGCAAGTCCCCGAGGCGCGATGCTT 6153 Query 52211 TTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 |||| || ||| | |||||| | | ||| |||| ||||| || ||||| || Sbjct 6152 TTATGGGTTCCAAATCGCCATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGA 6093 Query 52271 GCAGCTG-ATAAAAGATGAGCACGAGCGCGACACGC-TGCTGAATGCGTTCGAGCACGTG 52328 || | || || || | |||| ||| ||| ||||| || |||| | | Sbjct 6092 -CACATACATCAAGGACCCGACCGAGAAGGAC-CGCGTGCTGCGCGCCATCGAAACCATT 6035 Query 52329 CCGTGCGTT---CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 |||||||| ||||| ||| | ||||| | |||||| ||| | | | |||| Sbjct 6034 CCGTGCGTCATGCGCAA---GGCCAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCC 5978 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || ||||||||||| || || |||||| || || ||| | || || ||||| Sbjct 5977 GCGTACGCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCG 5918 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || | ||||||||| | || | | || | ||||| |||||| ||||| ||| Sbjct 5917 TTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAAC 5858 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 || | || |||||||||||||| |||||| |||||||| ||| | ||| || | Sbjct 5857 GAACTCATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGCATGCTTGATGTACTCGAAG 5798 Query 52566 CGCGTGACCGAAAAATTGGATTCGGACACG---ATCC-TGAGCATGTTCAAGGAGGCGGT 52621 | ||| | | || || ||||||||| |||| ||| || || || || || Sbjct 5797 CTCGT---CAACAAGCTG---TCGGACACGCGCATCCACGAG-ATTGTCGGCGATGCCGT 5745 Query 52622 GGCTATCGAAAAGGAGTTTTTTA-CGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 | ||||| ||| ||||| | | || || |||| || || || | ||||||||| Sbjct 5744 TGAGATCGAGAAGCAGTTTGTGAGCGAGAGC-TTGCCCGTGGAACTCATTGGCATGAACT 5686 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 || | ||||||||| ||||| ||||| || ||||| || | | ||| || Sbjct 5685 CGGCGCTCATGTGCGAATACATTGAGTTCTGCGCCGATCGCCTCCTCGAATCGCTTGGCG 5626 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 || ||| ||| || || || ||||| | ||| ||| || || | | | Sbjct 5625 CCCCCAAGCTCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAG 5566 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| |||||||||||||||||||| || |||||||| Sbjct 5565 GCAAAACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 5529 >seq916 Length=99455 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||||||| || || || || | ||| || |||| | Sbjct 60873 GATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCA 60932 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| || || || ||||| ||||| ||| ||||| || | Sbjct 60933 AAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACG 60992 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||||| || ||||| || | ||| | || || ||||||| ||| || Sbjct 60993 TTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTG 61052 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 61053 ACGAAAATCTGCAT 61066 >seq3609 Length=34764 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || ||||| | | | |||||||| || ||||||||||||||| Sbjct 21584 CCACCACGCAGGCGAAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 21643 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || ||||| || || | | |||| || |||||||||||||| || Sbjct 21644 AGGGTACGACCGTCTTCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGG 21703 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || || | | || | | ||| | | ||| || Sbjct 21704 ATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACG 21763 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || || || || || || || ||||| Sbjct 21764 TCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 >seq2657 Length=89683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| |||| || || ||| || | ||| || |||| | Sbjct 86154 GATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCA 86213 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || || |||||||| || || ||||| ||||| ||| ||||| || | Sbjct 86214 AAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCACG 86273 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||||| | ||||| || | ||| | ||||| || |||| || || Sbjct 86274 TTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTG 86333 Query 138601 ACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 86334 ACGAAGATTTGCATGG 86349 >seq5958 Length=27980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||||| | || || ||| || | || || || | | Sbjct 18691 GACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCA 18632 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | |||||| ||||| || || || ||||| ||||| || ||||| || | Sbjct 18631 AAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCACG 18572 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||||| | ||||| |||| ||| | || || || |||| || || Sbjct 18571 TTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTC 18512 Query 138601 ACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 18511 ACGAAGATTTGCATGG 18496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496223809395120