Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3609 134 1e-26 seq916 102 8e-17 seq4437 93.3 4e-14 >seq3609 Length=34764 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||||||||| | || ||||| || || || |||||||||| || |||||| Sbjct 21368 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 21427 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || ||||| || |||| | || |||||||| ||||| || || |||||| Sbjct 21428 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 21487 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||||| |||| |||| | ||||| |||||| |||| ||| | Sbjct 21488 TCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTAT 21546 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || || || || ||||| Sbjct 21547 GGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21582 >seq916 Length=99455 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | ||| || || ||||| || ||||| |||| | Sbjct 60840 CCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 60899 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || || || || ||||||| |||||||| || || || Sbjct 60900 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 60959 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| ||| || ||||||| ||||| | | | ||| | || || Sbjct 60960 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGT-CAATCGAGTCGGACGGTTCCAC 61018 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| ||| || || ||||||||||| Sbjct 61019 GTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 61066 >seq4437 Length=14678 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 126890 CCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATC 126949 ||||| || |||| ||||| ||| | || || | ||| || ||||| ||| ||| | Sbjct 6729 CCGCGCAACCGCAGCACCAGATGCAGGGTCGAGTGGGATTGGATGTTGTAGTCGGCCAAC 6670 Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 || || ||| || |||||||||||||| | ||||| |||||||| || || ||||| Sbjct 6669 GTCCGGTCATCTTCGAGCTGTTTTCCAGCAAAAATCAAGCGCTGCTGGTCTGGCGGTATA 6610 Query 127010 CCCTCCTTGTC 127020 ||||||||||| Sbjct 6609 CCCTCCTTGTC 6599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475463823869040