Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2971 138 1e-27 seq916 111 1e-19 seq5958 100 3e-16 seq2657 86.0 6e-12 >seq2971 Length=8032 Score = 138 bits (152), Expect = 1e-27 Identities = 475/722 (66%), Gaps = 24/722 (3%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 |||||||||||||| |||||||||||||| ||||| || || |||||| | || |||| Sbjct 3529 CAAGTCGAAACCGGCACGCCGTACATGCTGTACAAGGATGCGTGCAACGGCAAGTCCAAC 3588 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGT--AATCTTTGCTCCGAAATTATCGAATACA 123717 ||| ||| |||| || || || || || || | |||| ||| || ||||| |||| Sbjct 3589 CAGCAGAACCTGGGCACGATCAA--GTCGTCCAACTTGTGCTGCGAGATCATCGAGTACA 3646 Query 123718 GCGATGC--CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TG-AATCGTTGC 123773 ||| || || ||||||||||||| || ||||| || | | ||| || | ||| Sbjct 3647 -CGA-GCAAGGACGAAGTGGCCGTGTGCAACTTGGCGTCCA-TCGCGCTGTCAAAGTT-T 3702 Query 123774 GTCGAAAACGGCG-CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAA 123832 ||||| |||| || ||| | ||| || || || | | || | || || || | Sbjct 3703 GTCGAGAACGCCGTGTTTGACTTTGCACACCTGCACAAG-ATCGCCAA---GGTGGTCAC 3758 Query 123833 G---AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTC 123889 | || | ||||| | ||||| || || | ||| || | | |||||||| Sbjct 3759 GACCAACCTCAACAAGGTGATCGACGTCAACTATTACCCCATCCAAGAAGCGCGCAACAG 3818 Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949 || || ||| | ||| |||| | ||| | ||||| | ||||||||||| | | Sbjct 3819 CAACATGCGCCACCGCCCGATCGGGATTGGCGTCCAAGGCCTTGCCGACGCGTTCATCCT 3878 Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAAC 124009 || | ||| ||| | ||||| ||| |||| || ||| || ||||| Sbjct 3879 CATGGGGTACTCGTTCGAGTCGGTGGAAGCCAAGGTGCTGAACCAGCAGATCTTTGAAAC 3938 Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069 || || ||| ||| |||| || | ||||| || || | || || ||||||| Sbjct 3939 CATCTACCACGCCGCCATGGAAACGTCCATGGAACTCGCCAAGAGCCAAGGGCCGTACGA 3998 Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129 | |||| |||| ||| | ||| | || | || ||||||||| ||||| | || Sbjct 3999 GACCTACGAGGGCTCCCCCGTGAGTCAGGGCAAGTTCCAGTACGACTTGTGGGGCGTCAC 4058 Query 124130 ACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC--GCACGGTTTG 124187 ||| | || ||||||| ||| |||| || |||| | | | |||||| | Sbjct 4059 GCCGTCGGATCTGTGGGATTGG-GCGTCGCTCAA-GGCGCAAGTGGCCCAGCACGGCATC 4116 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 || ||||||||| | |||| |||||| ||||| |||| || || || | || ||| Sbjct 4117 CGCAACTCGCTGCTCTTGGCCCCCATGCCCACGGCGTCCACCGCGCAGATCCTCGGCAAC 4176 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 |||||||| |||||||||| || ||| ||||| || || || | || ||||| Sbjct 4177 AACGAATCAATCGAGCCGTTTACGTCCAACATGTACAGCCGCCGCGTCCTCGCGGGCGAA 4236 Query 124308 TT 124309 || Sbjct 4237 TT 4238 >seq916 Length=99455 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| | |||| ||| |||||||||||||| || || ||||| Sbjct 60840 CCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 60899 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||||||| || || || | ||||| || |||||||| ||||| Sbjct 60900 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 60959 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || ||||| || ||||| |||| || | || | | |||||| | || || Sbjct 60960 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCAC 61018 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || || || || | ||| || || ||||| ||||| Sbjct 61019 GTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 61066 >seq5958 Length=27980 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||||||| || || ||||| || Sbjct 18700 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 18641 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| || |||||||| || ||||||||||| || |||||||| ||| Sbjct 18640 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 18581 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || | || | || | | |||||||| || || ||||| || | || || || || Sbjct 18580 TGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGT 18522 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || |||||||| Sbjct 18521 CAACGTCTTCACGAAGATTTGCAT 18498 >seq2657 Length=89683 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || |||| ||| |||||||||||||| || || || || | || || || Sbjct 86138 CACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTC 86197 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | || | |||||||||||||| ||||| ||||| || || || Sbjct 86198 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTG 86257 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||||| || | || | || | | |||||| | || || || | || | |||| Sbjct 86258 GATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTT 86316 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | || || || || |||||||| Sbjct 86317 TCCCCGTCAACGTCTTGACGAAGATTTGCAT 86347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451968051101160