Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2971 143 3e-29 seq1997 132 6e-26 >seq2971 Length=8032 Score = 143 bits (158), Expect = 3e-29 Identities = 290/427 (68%), Gaps = 5/427 (1%) Strand=Plus/Minus Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGC 116912 ||| || || ||||| || |||| ||||| |||| ||||||||||| | || | Sbjct 3203 GATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGCC 3144 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 ||||| || || | || || |||| || || |||||||| |||||||| || | || Sbjct 3143 CTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGGA 3084 Query 116973 TTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032 || || ||||| ||||| ||| |||| | || | |||||||| || || Sbjct 3083 GGACCCGTTGGTCCCGCGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGCC 3024 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 ||| || || |||||||| || || || || | | | | || ||||||| || || Sbjct 3023 AATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTTC 2964 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 117152 ||| || || |||| | | | ||||||||| ||||| ||| || | || || || Sbjct 2963 GATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTGCC 2904 Query 117153 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGG 117211 |||||||| | ||| || ||||||||| |||| ||| ||| ||||| | ||||| | Sbjct 2903 GGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAA-GTACAATTGCGACATGTACTCGTACG 2845 Query 117212 TCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 | || || || ||||||||| ||| || || | | || ||||| | || || Sbjct 2844 TGGTCAGCACCGACTCAATGTCTTCTTTGTGGATGCCCACAGCCACGCGCATGATCAAGT 2785 Query 117272 ATTgggg 117278 |||||| Sbjct 2784 GTTGGGG 2778 Score = 134 bits (148), Expect = 2e-26 Identities = 807/1277 (63%), Gaps = 44/1277 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGG-GTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 115584 |||||||||| | ||| || |||| || |||||||||||||| || ||||| | Sbjct 4588 TGAACTGAATCGCGTCA-GCTTTGGGGCGCGAGCGGAGGTAGTACATACCGGTCTTCAAG 4530 Query 115585 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 || ||||||| ||||| | ||||| || | | ||| || |||| | ||| Sbjct 4529 CCGCGCTTCCACGCATAAAAGTGCATGGACGTGAGCTTACTGATGCTTGGGTCGGCGATG 4470 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 | |||||| |||||| ||| |||||| || || || || |||| || | | Sbjct 4469 TGCACGTTCATGCTTTGGCTTTGGCAGATGAACGCACCGCGGTCGGCGGCCAAGTCGAGC 4410 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || |||| |||||| ||||||||||| |||| | | ||| | || | ||||| Sbjct 4409 ACGACCTTTTGCTTGATCTCCCACACAGTCTTGTACACTTCCTTGACGTCCGCGGGGATG 4350 Query 115765 TCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATG--AGATCC---TTCATA--TC 115817 | ||| ||||| | ||||| | |||| ||||| | | | || Sbjct 4349 GACGCGACGTTTTGAACG-------CTGCCGCGGTCATGCAAGATCTGGTTGCGGACGTC 4297 Query 115818 CTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAA 115877 | ||| ||||| | | | || |||| || | || ||| || || | || Sbjct 4296 GCTGTTCCACAGACCCAGCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGATGGTGAA 4237 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 || ||||||||| ||| | || ||||||| ||| | ||||| | | || || Sbjct 4236 TTCGCCCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGATTCGTT 4177 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| || | ||| || || ||||| || ||||||||||| |||| ||| || |||||| Sbjct 4176 GTTGCCGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCG 4117 Query 115998 GAGACCCACC----CCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTG 116053 || || | || || |||| ||||||| | |||| || | || | | Sbjct 4116 GATGCCGTGCTGGGCCACT--TGCG--CCTTGAGCGACGCCCAATCCCAC---AGATCCG 4064 Query 116054 TCTCCC---CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 116110 | | | |||||| || |||||| | || || | | || || ||||| Sbjct 4063 ACGGCGTGACGCCCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGT 4004 Query 116111 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 116170 | ||||| || || || | || || | ||| | || || | ||| ||||| | Sbjct 4003 AGGTCTCGTACGGCCCTTGGCTCTTGGCGAGTTCCATGGACGTTTCCATGGCGGCGTGGT 3944 Query 116171 ACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGAC 116230 | || || ||||| || | |||| ||||||| || | || || |||| | || Sbjct 3943 AGATGGTTTCAAAGATCTGCTGGTTCAGCACCTTGGCTTCCACCGACTCGAACGAGT-AC 3885 Query 116231 GGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289 || | || || | || || || |||||||| || | || || ||||| || | | Sbjct 3884 CCCATGAGGATGAACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGC 3825 Query 116290 ATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349 || || || || || | | ||| ||| | || ||||| ||| | || || Sbjct 3824 ATGTTGCTGTTGCGCGCTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGG 3765 Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTC 116408 || | ||||| ||||| | ||| | || || | | | | ||||| || ||| |||| Sbjct 3764 TTGGTCGTGACCACCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACACGGCGT-TCTC 3706 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 |||| |||| | || ||||| ||||||| || ||||| | || ||||| Sbjct 3705 ------GACAAACTTTGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTT 3652 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 |||||||| || || || ||||| || || ||| || ||||||| ||||| Sbjct 3651 GCTCGTGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTG 3592 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 || || ||||| ||| |||||||||||||| ||||| || ||||| || || || Sbjct 3591 CTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGAC 3532 Query 116589 TTGGGACTTGAGAATAGCCTTCCA-TACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 ||| |||| | || || ||| || | ||| || | | || | || || | Sbjct 3531 TTGCGACTCCAAGATGGCGAACCACAACTGCTGCGCCTTG-ATCGTCTTGCGCGCACGGC 3473 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG-AGC 116706 | ||| ||||||||| | | || ||||| ||||| | ||| |||| | | | ||| Sbjct 3472 CTTCCGACTCGTACTTGTGGAACAGCGCCTCGAACTCGGCGCCC-CAGCATTCGTGCAGC 3414 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | || |||||||| | ||| | || | ||| || ||||||||| Sbjct 3413 CCCGGCGCTTCATTGGGACAGAACAAGCTCCAGTCGCCGTTCGACTCGACGCGCTTCATG 3354 Query 116767 AAGAGGTCTGGGATCCA 116783 || || || || ||||| Sbjct 3353 AACAGATCCGGAATCCA 3337 >seq1997 Length=17169 Score = 132 bits (146), Expect = 6e-26 Identities = 342/508 (67%), Gaps = 20/508 (4%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||| ||||| || || || | | ||| | Sbjct 5522 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCAT 5581 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTT--GGCACCCCAATCTGTTTG 127342 ||||| | ||||| |||||||| | |||| | | || | |||| | || | Sbjct 5582 GTCCATCCAGTCAAAGGGGTTCTTGGCCG--CAAAGAGCTTGGGGGCGCCAAGCGATTCG 5639 Query 127343 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 127402 ||||| ||||| | | | |||||||||| || |||| | | |||||||| || ||| Sbjct 5640 AGGAGGCGATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATG 5699 Query 127403 AGGTTACATGGG--AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTA 127460 || || || ||| ||| | || | ||| |||||| || || || || || | | Sbjct 5700 AG-TTCCACGGGCAAGCTC-TCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGA 5757 Query 127461 CGATGGCGTGAATA---GTGTCCACCCCAGGTCTATTG-CGTAAAGTCTTGAAGAGTTCC 127516 | || |||| || |||||| | || | | ||| || || | || | || Sbjct 5758 CAATCTCGTGGATGCGCGTGTCCGAC--AGCT-TGTTGACG---AGCTTCGAGTACATCA 5811 Query 127517 A-CA-GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 127574 | || ||||| || ||| || || ||||| || ||||||||||| |||||||| ||| Sbjct 5812 AGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACA 5871 Query 127575 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 127634 | || |||||||| || |||||||| | ||| || || | || || || || ||||||| Sbjct 5872 GGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGA 5931 Query 127635 AGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTAT 127694 |||| || ||||| |||||||| | | |||||||| | | | | ||| | | Sbjct 5932 AGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGT 5991 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTT 127722 | ||||||| | |||||| | ||||| Sbjct 5992 CGCACCACTTGAGCGCCCAGTTGGCCTT 6019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613459492146360