Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2971 147 3e-30 seq1997 134 2e-26 seq2733 84.2 3e-11 >seq2971 Length=8032 Score = 147 bits (162), Expect = 3e-30 Identities = 452/684 (66%), Gaps = 24/684 (4%) Strand=Plus/Minus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 |||||||||||||||||| |||| | || | | || |||||||| ||||| Sbjct 4596 GTCCACCGTGAACTGAATCGCGTCAGCTTTGGGGCGCGAGCGGAGGTAGTACATACCGGT 4537 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| | ||| || |||| | || | ||||||||| | || || || | | | ||||| Sbjct 4536 CTTCAAGCCGCGCTTCCACGCATAAAAGTGCATGGACGTGAGCTTACTGATGCTTGGGTC 4477 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 ||| ||||| | ||||| ||||||||| |||||| | | || || ||||||| Sbjct 4476 GGCGATGTGCACGTTCATGCTTTGGCTTTGGCAGATGAACGCACCGCGGTCGGCGGCCAA 4417 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT---- 204077 | || | | ||| ||| ||||||||||| |||||| |||| || || || Sbjct 4416 GTCGAGCACGACCTTTTGCTTGATCTCCCACACAGTCTTGTACACTTCCTTGACGTCCGC 4357 Query 204078 GTTGAGGCACATCTTCCCACGTCCTGATCGA-GCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | || | || | |||| ||| || |||| ||| || | ||| | Sbjct 4356 GGGGATGGACG-----CGACGTTTTGAACGCTGCCGCGGTCATGCAAGA-TCTGGTTGCG 4303 Query 204137 GTCTCCTCCCC-CCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | | ||||| |||| | |||||||||| || || || ||| | ||| Sbjct 4302 GACGTCGCTGTTCCACAGACCCAGCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGAT 4243 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 || || || | || || | ||| || ||| |||| || || || |||| | Sbjct 4242 GGTGAATTCGCCCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGA 4183 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||||| ||||| |||||| |||||||||||||| |||| |||||| || Sbjct 4182 TTCGTTGTTGCCGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGA 4123 Query 204316 GTTGCGCACACCGTATTTTTGGAC-CCTGCG-CTTCAGAGAGGTCCAGTCGTGC--ATCG 204371 |||||| | ||| | | || | | |||| ||| || || | ||| || | ||| Sbjct 4122 GTTGCGGATGCCG--TGCTGGGCCACTTGCGCCTTGAGCGACGCCCAATCCCACAGATCC 4065 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 || || | |||||||||| |||| |||| || |||| ||||| || ||| ||||| Sbjct 4064 GAC--GGCGTGACGCCCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCT 4007 Query 204432 TGTACGTCGGATAAGGCTGAT-CCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489 ||| ||| || ||| | ||||| || || || || || | |||||||| Sbjct 4006 CGTAGGTCTCGTACGGCCCTTGGCTCTT-GGCGAG-TTCCATGGACGTTTCCATGGCGGC 3949 Query 204490 ATAGTACATGGTCTCAAAGATCTG 204513 | ||| ||||| ||||||||||| Sbjct 3948 GTGGTAGATGGTTTCAAAGATCTG 3925 >seq1997 Length=17169 Score = 134 bits (148), Expect = 2e-26 Identities = 306/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| ||||||||||||||||| || ||||| || ||||||| ||||| || | || Sbjct 5813 GCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAG 5872 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAA 160040 ||||||||||| ||| ||| ||||||||||| |||| ||| || | |||| || | Sbjct 5873 GCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAACGAACCGGAGAAGA 5931 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG---TTGGTGT 160097 |||| || |||||||| || ||||| |||| | ||| | | | |||| ||| ||| Sbjct 5932 AGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGT 5991 Query 160098 CATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGG 160157 | | |||| | ||||| | ||||| || |||||| ||| |||| || Sbjct 5992 C---GCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGATGG 6048 Query 160158 CGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGT 160217 || | || | ||||| ||| || |||||||| || | || || ||||| Sbjct 6049 CGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGCGAGT 6108 Query 160218 ACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCA 160277 ||| ||| | ||| | ||||||||||| || || || || || || |||||| Sbjct 6109 ACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCTCGG 6168 Query 160278 GATACTGCACCTCCTGTGTGAACCTT--TGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 | ||||| || | || || || || |||| || | || || | |||||| Sbjct 6169 GGACTTGCACTTCAT-TGCTAAAGTTCATG-GCCAGGTTTTCGTTGACGATGCCGTCGCT 6226 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAA 160368 || |||||||| |||| |||||| | |||||| Sbjct 6227 CGCAGCAAAGAACGCCAGCACGTGCGTGATGAA 6259 >seq2733 Length=19037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 116117 TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACGCGCTACTGACTCATAT 116176 ||| ||||||||| | ||||| ||||| || |||| ||||||||||| ||||| | | | Sbjct 12160 TGCCGACATGGGGCTCGGCGTGCCCTTCAATATTGCCAGCTACGCGCTGCTGACCCGTCT 12219 Query 116177 TATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTGATACACTCTATTGGGGACGCGCA 116236 | || || || | || ||| || || || || ||| |||| |||||||| Sbjct 12220 CCTCGCCCAAGTGTGTGGGCTCCAAGCTGGCGACTTCATTCACGTGTTTGGCGACGCGCA 12279 Query 116237 CATCTACACCAACCATGTGGCGCAGCTCGAGCTGCAGGTGAAGCGG 116282 ||||| ||||||||||||| ||| || |||| | |||||| Sbjct 12280 TGTCTACTTGAACCATGTGGCGCCCCTCCAGGAGCAGCTCAAGCGG 12325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795093366743760