Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2657 156 1e-32 seq5958 129 1e-24 seq916 120 7e-22 seq3609 113 1e-19 >seq2657 Length=89683 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | ||||| |||||||||| |||||||||| ||| || | || ||| Sbjct 86136 AGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCT 86195 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||| |||||||| || ||||||||||| ||| ||||| ||| Sbjct 86196 TCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCC 86255 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||||||| |||| | ||| | || ||| |||||||||||||| || Sbjct 86256 TGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTT 86315 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || ||||| Sbjct 86316 TTCCCCGTCAACGTCTTGACGAAGATTTG 86344 >seq5958 Length=27980 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 199423 AAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAG 199482 || |||||| || ||||||||||||| ||||||||| | || | || ||||||| Sbjct 18704 AATGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAA 18645 Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542 |||||| || || ||||| | |||||||||||| || ||| ||||| || ||||| Sbjct 18644 CTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAAT 18585 Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 ||||||||||||| || | | ||| | | ||| || || | |||||| ||||| || Sbjct 18584 CTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCC 18525 Query 199603 CGTGAGAGTTTTCACAAAAATTTG 199626 ||| | || ||||| || ||||| Sbjct 18524 CGTCAACGTCTTCACGAAGATTTG 18501 >seq916 Length=99455 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| |||||||||| ||||||||| ||| || | |||||||||| ||||| ||| Sbjct 60870 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 60929 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||||||||||| || || ||||| || || ||||||||||| Sbjct 60930 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 60989 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| || | | ||| | | ||| || ||||||||||| ||||| || || | ||| Sbjct 60990 ACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTC 61049 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 61050 TTGACGAAAATCTG 61063 >seq3609 Length=34764 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || ||||||||||| |||| |||||| || || || | || |||||||| ||| Sbjct 21380 TGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGC 21439 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || |||||||| || ||||| || ||| |||||||| ||||| |||||| Sbjct 21440 TTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTT 21499 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| ||| |||| | ||| | | || || || | || || ||||| || ||| Sbjct 21500 TGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTG 21559 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| Sbjct 21560 AGGGTCTTGACGAAGATTTG 21579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178827632211807