Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1997 378 7e-100 seq3609 149 6e-31 seq5958 123 2e-23 seq2657 122 9e-23 seq916 118 1e-21 seq4437 82.4 8e-11 >seq1997 Length=17169 Score = 378 bits (418), Expect = 7e-100 Identities = 454/611 (74%), Gaps = 6/611 (1%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||||||| ||||||||||| |||| ||| ||||| | || ||||||||||| || Sbjct 5806 ACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGA 5865 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | || ||| |||||||| ||||| || ||||||||||| |||| | ||| || | Sbjct 5866 ACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGG 5925 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||| || ||||| ||||| || || | ||||||| || ||| ||| | Sbjct 5926 AGAAGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCT 5985 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 || || || ||| |||||||| | |||||| |||||||||| || ||||||| Sbjct 5986 TGTTGTCGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGA 6045 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 ||||| || || ||| ||||| || | | ||| |||||||||||| || Sbjct 6046 TGGCGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGCG 6105 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | |||| ||||||||| | ||| || ||||||||||| || || |||||||| ||||||| Sbjct 6106 AGTACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCT 6165 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCCGTC 133304 || || |||||||| | || ||| | || | |||| |||||||||||||||||||| Sbjct 6166 CGGGGACTTGCACTTCAT-TGCTAAA-GTTCATGGCCAGGTTTTCGTTGACGATGCCGTC 6223 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 ||| || || || || |||||||||||| ||||||| |||||||||||| ||| Sbjct 6224 GCTCGCAGCAAAGAACGCCAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGACAACTT 6283 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 |||||||||| || | || | || ||| | |||||| | ||||| || ||||| Sbjct 6284 GATCCAGTCGCGC-TGATCGTGCACCAAGTCGAGTTCCTCGGCAGTCCAGAAGCTCGCCT 6342 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 ||||||| |||||||| ||||| ||||| || || || || || | ||| |||||| Sbjct 6343 CGGCTTTCTTGTACATTTCCCACACGTCCGCATGCTGGATCGGGAACAACACGAACCGGT 6402 Query 133484 GGGGGTTTTCG 133494 |||||| ||| Sbjct 6403 TGGGGTTCTCG 6413 >seq3609 Length=34764 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| ||| ||||||||||| || | Sbjct 21582 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21523 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || ||||| || | || || Sbjct 21522 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 21464 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||||| || || ||||| |||| |||||||| | ||| ||||| Sbjct 21463 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 21404 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| |||||||||||| |||| Sbjct 21403 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCG 21368 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| ||| ||||||||||| || | Sbjct 21810 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21751 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| ||||| || || || ||| | ||||| Sbjct 21750 GACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 21692 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||||| || || ||||| |||| || ||||| | ||||||||| Sbjct 21691 ACAGCGCCTTATCTTTGCGGGGAAGCAACTGGAAGACGGTCGTACCCTGAGCGACTACAA 21632 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || |||||||||||||| || Sbjct 21631 CATCCAGAAGGAGTCTACCCTGCATTTGGTGCTTCG 21596 >seq5958 Length=27980 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | ||||| || |||||||| ||||||| || | || Sbjct 18498 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 18557 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | || |||| || | ||||| || || |||||| | ||||| Sbjct 18558 GACTCGATTGACAACG-TGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCA 18616 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||| |||| |||| ||||| |||| ||||||||| Sbjct 18617 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAA 18676 Query 38423 CATCCAAAAGGA 38434 |||||||||||| Sbjct 18677 CATCCAAAAGGA 18688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 |||||| | ||||| ||||| | || | || ||||| ||| |||| |||| ||||| Sbjct 18702 ATTCCCCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACG 18761 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGC 38468 |||| ||||||||||||||||||||| | || || || |||||||| ||| || | || Sbjct 18762 CTCAGCGACTACAACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGT 18821 Query 38469 GGCCGCCGCACGCAT 38483 || || |||||| Sbjct 18822 GGTTGCTAAACGCAT 18836 >seq2657 Length=89683 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | ||||| ||||||||||| | || || || | || Sbjct 86347 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 86288 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || || |||||| | ||||| Sbjct 86287 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCA 86229 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || ||||| || |||| |||| ||||| | | |||||||| Sbjct 86228 GCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAA 86169 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| ||||| |||| | ||||| || Sbjct 86168 CATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCG 86133 >seq916 Length=99455 Score = 118 bits (130), Expect = 1e-21 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || | || || || |||||||| | ||||| || | Sbjct 61070 AAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACC 61011 Query 38300 CACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC- 38357 ||||| | || |||| | || |||| |||| ||||| || || || |||||| Sbjct 61010 GTCCGACTCGATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGCAT-CCCGCCT 60953 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||||| | || | || ||||| || |||| || | |||||| | | |||| Sbjct 60952 GACCAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGAC 60893 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||||||||| ||||| |||| |||||||| || Sbjct 60892 TACAACATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCG 60852 >seq4437 Length=14678 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||| | || ||| | |||||||| |||||||| || ||| |||| | | || Sbjct 6512 ATCTTCATCAAGACGTTGACGGGCAAGACCATCAC-GTTGACCGTGAGG--ATGG---GC 6565 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCG------ACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | |||| |||| ||||| |||| ||||| || || | ||||| Sbjct 6566 GTGACCATATTCAAAGTGAAAACCCTCGTGCAAGACAAGGAGGGTATACCGCCAGACCAG 6625 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || || |||||||| || || || || || | |||||||||| Sbjct 6626 CAGCGCTTGATTTTTGCTGGAAAACAGCTCGAAGATGACCGGACGTTGGCCGACTACAAC 6685 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 |||||| | |||| |||||| |||||||||| ||| Sbjct 6686 ATCCAATCCCACTCGACCCTGCATCTGGTGCTGCGGTTG 6724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500133905312640