Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2971 114 2e-20 seq1997 109 7e-19 seq177 95.1 2e-14 >seq2971 Length=8032 Score = 114 bits (126), Expect = 2e-20 Identities = 284/428 (66%), Gaps = 5/428 (1%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || || || ||||||| || || | || ||||| ||||| ||||| || || Sbjct 2777 CCCCCAACACTTGATCATGCGCGTGGCTGTGGGCATCCACAAAGAAGACATTGAGTCGGT 2836 Query 111671 TTTGGAGACATACGACAAGATGTCCCG-TGGTATGTTCATCCACGCAACACCAACCCTCT 111729 || || ||||| | ||||| | | ||| |||| |||||| || || ||| | | Sbjct 2837 GCTGACCACGTACGAGTACATGTCGCAATTGTAC-TTCACCCACGCGACCCCGACCTTGT 2895 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || | || ||| |||| || ||||| | | | ||||| | Sbjct 2896 TCAACGCCGGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACG 2955 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| ||| | || || |||| ||| | | | ||||| || || |||||||||| Sbjct 2956 ATTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTG 3015 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | || || || || ||||||| | || | |||| ||| ||| | || || | Sbjct 3016 GCGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCTACATTCGCGGGACCA 3075 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || || ||||| |||||||| || || |||| ||| || ||||| | Sbjct 3076 ACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTACG 3135 Query 111970 TAAACCAAGCTGGGCG---TCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | ||| | |||||||| || |||| | || | ||||| ||||| | Sbjct 3136 TGGACCAGGGCGGGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCATG 3195 Query 112027 CGGATATC 112034 | || ||| Sbjct 3196 CCGACATC 3203 >seq1997 Length=17169 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || ||||| || |||| || || || || || ||||||||||| ||||| |||||| Sbjct 5971 GCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGC 5912 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 | || | ||||||||||||||| || |||||||| || || | ||||| ||||| || Sbjct 5911 TCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTC 5852 Query 102297 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| || ||||| || || ||| || ||||| Sbjct 5851 ATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGC 5817 >seq177 Length=11201 Score = 95.1 bits (104), Expect = 2e-14 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 175994 GTAAAGATATACCTCGTTTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACTGA 176053 ||||||||||||| | | ||| ||||| || ||| ||| ||||| ||||||||| Sbjct 979 GTAAAGATATACCGGGCACTCGCCGCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGA 1038 Query 176054 CCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACA 176113 ||| |||| | || || | ||||| || || | | |||| | ||||| |||||| Sbjct 1039 CCAGACGGAACCAGCAGTGGCACGTTGTTGGAGCCGACGAAGTCCTGCGCCATGTTGACA 1098 Query 176114 ATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCC 176173 |||||| | || || | || ||||| |||||||| | | || ||| | | Sbjct 1099 ATCGTGCTCAATAGCGACGCCTCGCCGTGATGGTACGCCGTGTGTTCGGCGCAGTACCCG 1158 Query 176174 GCCAACTGCGCCACTTTCATCTCATCCTTGA--GATTCTTGTGGAAA-CATGCGTACATA 176230 |||| || || |||||||| ||||||| | | || |||| ||||| ||| Sbjct 1159 GCCAGTTGGGCGACTTTCAT---TTCCTTGACCAAGTGCCGTCGAAAGCATGCAAACAAT 1215 Query 176231 ACCTTGCGTTGCGAAGGCTTGAGACCATC 176259 |||||||| || || |||||||| || || Sbjct 1216 ACCTTGCGCTGGGACGGCTTGAGTCCGTC 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620694129519120