Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1997 129 7e-25 seq2971 107 2e-18 >seq1997 Length=17169 Score = 129 bits (142), Expect = 7e-25 Identities = 352/528 (67%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| ||||| || || || || || | | |||||| | ||||| Sbjct 5529 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCATGTCCATC 5588 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 ||||||| || || |||| ||| |||| || |||| || || || | Sbjct 5589 CAGTCAAAGGGGTTCTTGGCCGCAAAGAGCTTGGGGGCG--CCAAGCGATTCGAGGAGGC 5646 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||||| | |||| || |||||| |||| |||| ||||| || ||||| || | Sbjct 5647 GATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAG-TTCC 5705 Query 119386 ACGGGAGAGCA-TCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 ||||| ||| ||| | || | |||||||||||| || || || || || | Sbjct 5706 ACGGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCTCG 5765 Query 119445 TGAATAGTTTCTGTC-GATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCAAA 119500 || || | |||| || | ||||| | ||| || | || | | ||||| Sbjct 5766 TGGAT-GCGCGTGTCCGACAGCTTGTTG---ACGAGCTTCGAGTACATCAAGCATGCAAA 5821 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 || || || ||||| || || |||||||| || || ||| | || || ||||| Sbjct 5822 GTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCCCGGCAT 5881 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||||||||||| || || || || ||||||||||| || Sbjct 5882 GAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGATGCCTTC 5941 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAG--ACTTGTCGAACCACTT 119677 ||| |||||| |||| | ||||| || | | | || | |||||| ||||||| Sbjct 5942 CACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGTCGCACCACTT 6001 Query 119678 GAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||| |||||||||||||| ||| | ||| || | |||| |||||| Sbjct 6002 GAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGATGGC 6049 >seq2971 Length=8032 Score = 107 bits (118), Expect = 2e-18 Identities = 192/279 (69%), Gaps = 1/279 (0%) Strand=Plus/Minus Query 110764 CCCGCC-TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 |||||| |||| || ||||| || ||| | ||||| |||| ||||| ||||| || || Sbjct 3149 CCCGCCCTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCC 3090 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| || || || || | ||| | || |||| || |||| |||||| | Sbjct 3089 GTTGGAGGACCCGTTGGTCCCGCGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTT 3030 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAAT 110942 || ||||| || || |||||||| ||| ||||| | | | ||| | || || Sbjct 3029 CACGCCAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGAT 2970 Query 110943 ACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGG 111002 ||| || || ||||| |||| ||| | || ||||| || |||| ||||||||||| Sbjct 2969 ACCTTCGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGG 2910 Query 111003 CGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 ||| || || ||||| | || || ||||| || |||| Sbjct 2909 CGTGCCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAA 2871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588930199753800