Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2971 138 1e-27 seq1997 118 1e-21 >seq2971 Length=8032 Score = 138 bits (152), Expect = 1e-27 Identities = 291/428 (68%), Gaps = 7/428 (2%) Strand=Plus/Minus Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA---CGCCCAGC 106944 ||| || || ||||| ||||| | || | |||| || ||||| || | ||| | Sbjct 3203 GATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGCC 3144 Query 106945 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 107004 || | || ||||| || ||| |||| || || |||||||| ||||| || || | || Sbjct 3143 CTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGGA 3084 Query 107005 TTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCC 107063 || || ||||| ||||| || | || |||| | | | ||||||| || | Sbjct 3083 GGACCCGTTGGTCCCGCGAATGT-AGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGC 3025 Query 107064 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 107123 |||| || ||||||||||| || || |||||| | | | | || | |||||||| | Sbjct 3024 CAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTT 2965 Query 107124 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 107183 ||| || || ||||| ||| | |||||||| |||| || || | || || | Sbjct 2964 CGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTGC 2905 Query 107184 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC-TTGGGACATCTTGTCGTAT 107242 | || ||||| | ||| || || ||||| |||| ||| ||| ||||| | ||||| Sbjct 2904 CGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAG-TACAATTGCGACATGTACTCGTAC 2846 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 || || || || ||||||||||| ||||||||| | ||||| ||||| | || | Sbjct 2845 GTGGTCAGCACCGACTCAATGTCTTCTTTGTGGATGCCCACAGCCACGCGCATGATCAAG 2786 Query 107303 TATTGGGG 107310 | |||||| Sbjct 2785 TGTTGGGG 2778 Score = 134 bits (148), Expect = 2e-26 Identities = 453/698 (65%), Gaps = 18/698 (3%) Strand=Plus/Minus Query 106129 GGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 106188 ||| || ||||| | ||||| || | |||||| | || | ||| | || || Sbjct 4017 GGGGGAGCCCTCGTAGGTCTCGTACGGCCCTTGGCTCTTGGCGAGTTCCATGGACGTTTC 3958 Query 106189 CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGA 106248 || || ||||| || |||||||||||||| | |||| | |||||||||| | || Sbjct 3957 CATGGCGGCGTGGTAGATGGTTTCAAAGATCTGCTGGTTCAGCACCTTGGCTTCCACCGA 3898 Query 106249 ATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 106308 || || | ||| | | || || | || || || ||||| || || | || || Sbjct 3897 CTCGAACGAGTACCCCATGAGGATGAACGCGTCGGCAAGGCCTTGGACGCCAATCCCGAT 3838 Query 106309 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 106368 || | ||| ||||| || || ||||| | | ||| ||| | || ||| || Sbjct 3837 CGGGCGGTGGCGCATGTTGCTGTTGCGCGCTTCTTGGATGGGGTAATAGTTGACGTCGAT 3778 Query 106369 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428 || ||| || || | || || | ||| | ||| | || || | | || | ||||| Sbjct 3777 CACCTTGTTGAGGTTGGTCGTGACCACCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAA 3718 Query 106429 -AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 | ||| |||| |||| |||||| || ||||| || ||||| ||||| || | Sbjct 3717 CACGGCGT-TCTC------GACAAACTTTGACAGCGCGATGGACGCCAAGTTGCACACGG 3665 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || || ||||| |||||||| | || || ||||||||||| ||| |||| Sbjct 3664 CCACTTCGTCCTTGCTCGTGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCG 3605 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | |||| |||| ||||| ||| |||||||||||||||||| |||||||| |||| Sbjct 3604 TGCCCAGGTTCTGCTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCG 3545 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATG 106666 | || || || || |||| | || || |||| || | ||| || | || Sbjct 3544 TGCCGGTTTCGACTTGCGACTCCAAGATGGCGAACCACAACTGCTGCGCCTTG----ATC 3489 Query 106667 GCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 106723 | ||| || || || |||| ||||||||| | | || || || ||||| | ||| Sbjct 3488 GTCTTGCGCGCACGGCCTTCCGACTCGTACTTGTGGAACAGCGCCTCGAACTCGGCGCCC 3429 Query 106724 ACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTC 106782 | || ||| || || || || | | |||||||| | ||| | || | Sbjct 3428 -CAGCATTCGTGCAGCCCCGGCGCTTCATTGGGACAGAACAAGCTCCAGTCGCCGTTCGA 3370 Query 106783 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 106820 ||| || ||||||||||| || || |||||||||| || Sbjct 3369 CTCGACGCGCTTCATGAACAGATCCGGAATCCACATGG 3332 >seq1997 Length=17169 Score = 118 bits (130), Expect = 1e-21 Identities = 339/503 (67%), Gaps = 24/503 (5%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCAT 117044 || || || || |||||||| || |||||||| || || | ||| | | | | ||||| Sbjct 5529 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGA-TCATGTCCAT 5587 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGT--GGCACCCCAACTTGTTTGAGGAGA 117102 ||||||| || ||||| || |||| | | || | |||| || |||||| Sbjct 5588 CCAGTCAAAGGGGTTCTTGGCCG--CAAAGAGCTTGGGGGCGCCAAGCGATTCGAGGAGG 5645 Query 117103 CGATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 ||||| | || | |||||||||| ||| |||| | | |||||||| || ||||| || Sbjct 5646 CGATCGGCGCAGA-ACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAG-TT 5703 Query 117162 ACATGGGAGTGCG-TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 || ||| || || | ||| ||||| |||||||| || || || || Sbjct 5704 CCACGGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCT 5763 Query 117221 CGTGGATA---GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---G 117274 ||||||| || || | | | | | | ||| || ||| || | || | | Sbjct 5764 CGTGGATGCGCGTGTCCG-ACAGCTTGT-TGACG---AG-CTTCGAGTACATCAAGCATG 5817 Query 117275 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTG 117334 |||| || ||| || || || || || || || ||||| || ||||| | ||||| | Sbjct 5818 CAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCCCG 5877 Query 117335 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 117394 ||||||| || |||||||| | |||| | || | |||||| || |||||||||||||| | Sbjct 5878 GCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGATGC 5937 Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCG-AAGGAGCGAGACTTTGTGTCAAAC 117453 | ||||| || ||||| | | |||||||||| | | ||| | ||| |||| || Sbjct 5938 CTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCG-CTTGTTGTCGCAC 5996 Query 117454 CATTTCATTGCCCATTTCGCCTT 117476 || || | ||||| || ||||| Sbjct 5997 CACTTGAGCGCCCAGTTGGCCTT 6019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589934921618040