Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5958 129 5e-25 seq916 125 6e-24 seq2657 91.5 1e-13 >seq5958 Length=27980 Score = 129 bits (142), Expect = 5e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || ||||| || ||||| ||| || || | | | || ||||| ||| Sbjct 18700 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 18641 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||||||||| || || || ||||||||||| || |||||||| ||| Sbjct 18640 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 18581 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | |||||| || || |||| || || || || Sbjct 18580 TGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTC 18521 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 || || || || || || |||||||| Sbjct 18520 AACGTCTTCACGAAGATTTGCATGGT 18495 >seq916 Length=99455 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| || ||||| ||| | || | | |||| ||||||||||| || Sbjct 60870 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 60929 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||| ||||| || || ||||| |||||||| || ||||| || ||||| || Sbjct 60930 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 60989 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| |||| |||||| || | |||| || || || || ||||| Sbjct 60990 ACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTC 61049 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 61050 TTGACGAAAATCTGCAT 61066 >seq2657 Length=89683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| || ||||| || | || | | | || ||||||||||| || Sbjct 86151 GTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCG 86210 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | || || || || || ||||| ||||| || || || || ||||| || Sbjct 86211 GCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTC 86270 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| || | |||||| || | |||| ||||| || || || || Sbjct 86271 ACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTC 86330 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || || |||||||| Sbjct 86331 TTGACGAAGATTTGCATGGT 86350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396248354790897