Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5958 104 2e-17 seq916 91.5 1e-13 >seq5958 Length=27980 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| ||||| || ||||| || || | || |||| ||||||||| Sbjct 18700 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 18641 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| ||||| || || | ||||| ||| |||||||| ||||||| Sbjct 18640 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 18581 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | || || || | ||||| || | ||| || || ||||||||| Sbjct 18580 TGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTC 18521 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || || ||||| ||| Sbjct 18520 AACGTCTTCACGAAGATTTGCATGGTG 18494 >seq916 Length=99455 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | ||| || ||||| || ||||| || | | || Sbjct 60849 AGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGG 60908 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| |||||||| |||| ||||| || || | || | ||| ||| Sbjct 60909 CCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCC 60968 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||||| || || | | || || |||| ||||| |||| ||| Sbjct 60969 TTGTCTTGGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTG 61028 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || ||||||||||| Sbjct 61029 ATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 61066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380908717906383