Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2971 223 6e-53 seq1997 201 2e-46 >seq2971 Length=8032 Score = 223 bits (246), Expect = 6e-53 Identities = 607/918 (66%), Gaps = 30/918 (3%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || || | |||||||| |||||||| || || ||||| || ||| Sbjct 4212 GTACATGTTGGACGTAAACGGCTCGATTGATTCGTTGTTGCCGAGGATCTGCGCGGTGGA 4153 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 || ||||||||||| |||| || || ||| | | ||||||| | | | | || Sbjct 4152 CGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATGCCGTGCTGGGCCACTTG-CG 4094 Query 213068 CCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 || ||| ||||| ||||| ||| ||| | | ||| ||||| || Sbjct 4093 CCTTGAGCGACGCCCAATCCCA---------CAGATCCGACGGCGTGACGCCCCACAAGT 4043 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | |||| || |||| | ||||||||| ||||| ||| | ||| || || || Sbjct 4042 CGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACGGCCCTTGGC 3983 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 |||||| || || ||||| | || ||| |||| ||||||||||||||| |||| | Sbjct 3982 TCTTGGCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAAAGATCTGCT 3923 Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||| ||| |||||| || ||| ||| | | |||| | |||| | || | Sbjct 3922 GGTTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGATGAACGCGTCGG 3863 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCT 213366 | || || ||||| || || ||||| || | ||| | || ||| ||| || || || Sbjct 3862 CAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTTGCTGTTGC-GCGCTTCT 3804 Query 213367 CCAA-GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 | ||||||| ||||| |||||| | ||||||||||||| ||| |||| |||| | Sbjct 3803 TGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCACCTTGGCG 3744 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGG 213485 | | | ||||| | | |||||| ||| || ||||||| | ||| Sbjct 3743 ATCTTGTGCAGGTGTGCAAAGTCAAACACGG------CGTTCTCGACAAACTTTGACAGC 3690 Query 213486 GCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCG 213545 |||||| |||| |||||| |||||||| || | | |||||||| ||||||||| Sbjct 3689 GCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTGTACTCGATGATCTCG 3630 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||| |||| | ||| |||||||||||||| ||||| ||||| ||||| Sbjct 3629 CAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGTTGGACTTGCCGTTGCAC 3570 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTC 213665 | ||||||||| |||||||| || | ||||| || | || ||| ||| || | | Sbjct 3569 GCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCGACTCCAAGATGGCGAAC 3510 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT--AGCCTCGTACTGTT 213723 || | | | ||||||| || || | || | ||| | | |||||||| | Sbjct 3509 CACAACTGCTGCGCCTTGA----TCGTCTTGC-GCGCACGGCCTTCCGACTCGTACTTGT 3455 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGA 213782 | | ||| | | ||| ||| ||||||| || ||| ||||| | || |||| Sbjct 3454 GGAACAGCGCCTCGAACTCGGCGCCCCAGCATTCGTGCAGCCCCGGCGCTTCAT-TGGGA 3396 Query 213783 CACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCA 213841 || | | ||||||||| ||| || ||| ||| | || ||||||||| ||||| | ||| Sbjct 3395 CAGAACAAGCTCCAGTCGCCGTTCGACTC-GACGCGCTTCATGAACAGATCCGGAATCCA 3337 Query 213842 CAGCGCGGTGAACAGGTC 213859 || ||| ||||| ||| Sbjct 3336 CATGGCGTAGAACAAGTC 3319 >seq1997 Length=17169 Score = 201 bits (222), Expect = 2e-46 Identities = 567/863 (66%), Gaps = 27/863 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| || ||||| || || || | ||| ||||| | ||||| Sbjct 5528 GTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCATGTCCAT 5587 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || |||||||| | | | | | | ||| | | ||| || ||| | Sbjct 5588 CCAGTCAAAGGGGTTCTTGGCCGCAAAGAGCTTGGGGGCGCCAAGCGATTCGAGGAGGCG 5647 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| ||| | |||| ||||||| ||||||| | ||||||||| ||||| ||| Sbjct 5648 ATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAGTTCCAC 5707 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||||| || | | ||||| |||||| |||| ||||| || || ||||||| | Sbjct 5708 GGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCTCGTG 5767 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | ||| | || || | |||||| | | |||| | || | || ||| |||||||| Sbjct 5768 GATGCGCGTGTCCGACAGCTTGTTG---ACGAGCTTCGAGTACATCAAGCATGCAAAGTC 5824 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | ||||| ||||||||| || |||||| |||| ||||| | || || ||||||| Sbjct 5825 GCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCCCGGCATGAG 5884 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 ||| | || |||||||| || || | ||| || || |||||||||||||| ||||| Sbjct 5885 CCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGATGCCTTCCAC 5944 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAG 48321 || ||||||||| || | ||| || | | ||| ||||| | ||| || Sbjct 5945 GGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGTCGCACCACTTGAG 6004 Query 48322 CGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGAGCTT 48378 |||||||| ||||| | ||| ||| || || || || ||||| | | | | | | Sbjct 6005 CGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGATGGCGCGCAGCACGCGGTC 6064 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 ||| ||| | |||| | || || |||| ||| | ||||| || || Sbjct 6065 CTT---CTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGC---GAGTACACTTCCGA 6118 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | || || || ||||| |||||||| || ||| | ||||| || ||||| Sbjct 6119 GTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCTCGGGGACTTGCAC 6178 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| || || || ||| || || ||||| || || || ||||||||||| Sbjct 6179 TTCATTGCTAAAGTTCATGGCCAGGTTTTCGTTGACGATGCCGTCGCTCGCAGCAAAGAA 6238 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT--TCCA---GCCC 48610 || || || || | | ||| ||||||||||| || | | | |||| || | Sbjct 6239 CGCCAGCACGTGCGTGATGAAGAAGCGCTCGTTGT--CCGACAACTTGATCCAGTCGCGC 6296 Query 48611 TGTACGTCTTTGC-CCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || || ||| ||| ||| | ||| || ||||||||||| ||| ||||| || Sbjct 6297 TGATCG----TGCACCAAGTCGAGTTCCTCGGCAGTCCAGAAGCTCGCCTCGGCTTTCTT 6352 Query 48670 GTACATGCCCCATATGTCCGGAT 48692 |||||| |||| | ||||| || Sbjct 6353 GTACATTTCCCACACGTCCGCAT 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931460361680640