Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1997 158 2e-33 seq2971 84.2 4e-11 >seq1997 Length=17169 Score = 158 bits (174), Expect = 2e-33 Identities = 324/475 (68%), Gaps = 10/475 (2%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTC-TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 |||||| || | ||| ||| | ||||| |||| |||||||| || || || || || Sbjct 6270 ACGAGC-GCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTC 6212 Query 25633 AACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTC 25692 ||||| || ||| | || || | || |||||||| | ||||| || || Sbjct 6211 AACGAAAACCTGGCCATGAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGCTTT 6152 Query 25693 TACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT- 25751 || || ||||| || ||||||||||| | ||||| || ||||| | ||| || || Sbjct 6151 TATGGGTTCCAAATCGCCATCGAAAACATCCACTCGGAAGTGTA---CTCGCTCCTCATC 6095 Query 25752 --GACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 || ||||| | ||| |||||| || || || | | |||||||| ||| Sbjct 6094 GACACATACATCAAGGACCCGACCGAGAAGGACCGCGTGCTGCGCGCCATCGAAACCATT 6035 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 || || ||| | | ||||| ||||| | |||||| | ||| | || |||| || Sbjct 6034 CCGTGCGTCATGCGCAAGGCCAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCCGCG 5975 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT- 25928 | | |||||| | || || || || || ||||| |||||||| ||| ||||||||| Sbjct 5974 TACGCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTC 5915 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| ||||||| ||||||||| || ||| |||||| || |||| || || ||||| Sbjct 5914 TGC-TCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGA 5856 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||| | ||||| || || ||| | || ||||| ||| || | ||| || Sbjct 5855 ACTCATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGCATGCTTGATGTACTCG 5801 >seq2971 Length=8032 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 221095 CAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTG 221154 |||| |||| | || || |||||| || | ||| || |||| ||| || | | Sbjct 4272 CAGCTCCTTCATCAAGTACTTGTTAACGATGGTGAATTCGCCCGCGAGGACGCGGCGGCT 4213 Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || || ||||| ||||| ||||||||||| |||||||| || ||| Sbjct 4212 GTACATGTTGGACGTAAACGGCTCGATTGATTCGTTGTTGCCGAGGATCTGCGCGGTGGA 4153 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCG 221250 || ||||||||||| |||| ||||| |||||| Sbjct 4152 CGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCG 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928772570706240