Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3609 114 8e-20 >seq3609 Length=34764 Score = 114 bits (126), Expect = 8e-20 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| ||||||||||| ||||| || || ||||| ||||||||||| |||||||||||| Sbjct 21428 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 21487 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAAT--AGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 || || |||||||| ||||| || || ||| || | || | || ||||| | Sbjct 21488 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACG--TCGAGGGTTA 21545 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| ||||| ||||| Sbjct 21546 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 21579 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || ||||| ||||| || ||||| || || || || ||||||||| Sbjct 21656 TCTTCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTG 21715 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAAT--AGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 || || ||||| || ||||| || || ||| || | || | || ||||| | Sbjct 21716 TCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACG--TCGAGGGTTA 21773 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| ||||| ||||| Sbjct 21774 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 21807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267912351125708