Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2971 158 1e-33 seq1997 118 1e-21 >seq2971 Length=8032 Score = 158 bits (174), Expect = 1e-33 Identities = 297/429 (69%), Gaps = 7/429 (2%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| || || || ||||||| || || | ||||||||| ||||||||||| || || Sbjct 2777 CCCCCAACACTTGATCATGCGCGTGGCTGTGGGCATCCACAAAGAAGACATTGAGTCGGT 2836 Query 75271 CTTGGAGACATACGACAAGATGTCCCAA-GGTATGTTCATTCACGCAACACCAACCCTCT 75329 || || ||||| | ||||| ||| ||| |||| ||||| || || ||| | | Sbjct 2837 GCTGACCACGTACGAGTACATGTCGCAATTGTA-CTTCACCCACGCGACCCCGACCTTGT 2895 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || || | || || |||| |||||||| | ||| ||||| | Sbjct 2896 TCAACGCCGGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACG 2955 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 | || ||| | |||||||| | || | | | | |||||| || || |||||||||| Sbjct 2956 ATTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTG 3015 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 75508 | || ||||| || ||||||| | | | |||| || | || ||||| ||||| Sbjct 3016 GCGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCT-ACATTCGCGGGACC 3074 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || || | || || ||||| |||||||| || || |||| ||| || ||||| Sbjct 3075 AACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTAC 3134 Query 75569 GTAAATCA-AGCGGGG--CGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | || |||||| ||||||||||| |||| | |||||||| || |||||| Sbjct 3135 GTGGACCAGGGCGGGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCAT 3194 Query 75626 GCCGATATC 75634 ||||| ||| Sbjct 3195 GCCGACATC 3203 Score = 93.3 bits (102), Expect = 5e-14 Identities = 281/432 (65%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || || || || || || ||||| ||||||||||| || ||| ||| ||||| || Sbjct 3535 GAAACCGGCACGCCGTACATGCTGTACAAGGATGCGTGCAACGGCAAGTCCAACCAGCAG 3594 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || |||| || |||||| || || | ||| || || | |||||||| ||| Sbjct 3595 AACCTGGGCACGATCAAGTCGTCCAACTTGTGCTGCGAGATCATCGAGTACACGAGCAAG 3654 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 || || ||| || ||||| ||||| || ||||| || |||||| |||| ||| Sbjct 3655 GACGAAGTGGCCGTGTGCAACTTGGCGTCCATCGCGCTGTCAAAGTTTGTC------GAG 3708 Query 76085 ACTCGCACT-TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | ||| | ||||| | || | | || || | ||| | ||| | || || | || || Sbjct 3709 A-ACGCCGTGTTTGACTTTGCACACCTGCACAAGATCGCCAAGGTGGTCACGACCAACCT 3767 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCG 76203 ||| || || ||| || | ||| ||| | | ||||| || || ||||| Sbjct 3768 CAACAAGGTGATCGACGTCAACTATTACCCCATCCAAGAAGCGCGCAACAGCAACATGCG 3827 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 ||| | || || || | || || ||||| || || || | || || | | || Sbjct 3828 CCACCGCCCGATCGGGATTGGCGTCCAAGGCCTTGCCGACGCGTTCATCCTCATGGGGTA 3887 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | | || || || | |||||||||| | |||| | |||||||||||||| || || Sbjct 3888 CTCGTTCGAGTCGGTGGAAGCCAAGGTGCTGAACCAGCAGATCTTTGAAACCATCTACCA 3947 Query 76324 CGCATCCCTGGA 76335 ||| || |||| Sbjct 3948 CGCCGCCATGGA 3959 >seq1997 Length=17169 Score = 118 bits (130), Expect = 1e-21 Identities = 339/503 (67%), Gaps = 24/503 (5%) Strand=Plus/Minus Query 65026 AAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTT-CGCCGAGCGCCT 65084 ||||| || ||||| | || |||| |||| ||| | ||| | | |||||||||| | Sbjct 6019 AAGGCCAACTGGGCGCTCAAGTGGTGCGACAACAAG-CGCGCCGCGTACGCCGAGCGCAT 5961 Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144 | ||||| || ||||| || |||||||||||||| || |||||| | || | ||| Sbjct 5960 CGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCTCCATCTTTTG 5901 Query 65145 GTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGA 65204 | | |||||||| || |||||||| ||||| | ||||| || ||||| || || || || Sbjct 5900 GCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCGCGCGA 5841 Query 65205 TGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 || || || ||| || ||||| | || | || ||| || ||| | | | Sbjct 5840 CGAAGGCCTGCACTGCGACTTTGCATGCTTGATGTACTCGAAG-CT---CGTCA-ACAAG 5786 Query 65262 CACTACCGAAAC---TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 | | | || || ||||||| || || || || |||||||| ||||| ||| Sbjct 5785 CTGT-CGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTGAGATCGAGAAGCAGTT 5727 Query 65319 CATCTTGGA-CGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377 | || || ||| || || ||||| || |||||||| | | |||| ||| | Sbjct 5726 TGTGAGCGAGAGCTTGCCCGTGGAA-CTCATTGGCATGAACTCGGCGCTCATGTGCGAAT 5668 Query 65378 ACATTGAGTATGTG-TCGGATCGTCTCCTCAAACAAGTTGGGGTGCC--ACCCATTTGGA 65434 ||||||||| | || | ||||| |||||| || |||| | || | | |||| Sbjct 5667 ACATTGAGT-TCTGCGCCGATCGCCTCCTCGAATCGCTTGGCGCCCCCAAGCTCTTTG-- 5611 Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTG-ATGGGAAGACCAACTTC 65493 || ||||| || ||||||| ||||| | | | | ||| | || || |||||||| Sbjct 5610 CGGCCAAGAACCCCTTTGACTGGATGGACATGA-TCTCATTGCAAGGCAAAACCAACTTT 5552 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 5551 TTCGAGAAGCGCGTGGGCGAGTA 5529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596523209256480