Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1748 96.9 1e-14 seq3732 87.8 5e-12 >seq1748 Length=11683 Score = 96.9 bits (106), Expect = 1e-14 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 410485 GTGCCCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGA 410544 ||| ||||||| |||||||| |||||| | ||||||||||| ||| ||||||||||||| Sbjct 3620 GTGTCCGCGTGGCGCAATGGCTAGCGTTTCGGACTTCTAATCCGGAGGTTGCGGGTTCGA 3561 Query 410545 GTCCCGTCGTGGGTAAttttttt 410567 |||||||||||| || ||||| Sbjct 3560 GTCCCGTCGTGGACGATCTTTTT 3538 >seq3732 Length=10824 Score = 87.8 bits (96), Expect = 5e-12 Identities = 172/250 (69%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || |||||||| || || | || || ||||||||||| ||||| | ||| Sbjct 4780 GTCTTGACGGCAGTATCAATGAGCCCTTCGCGCCCCCCCATAGCATGAAAGAAGAACTCC 4721 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 | || ||| | ||| | | ||| |||| ||||| || || | ||| ||| Sbjct 4720 T-GGGGCGTCAATCCCTTGAGGTACGAGTTCTCCACGAACCCGCGGGACTCTGGCCCCAA 4662 Query 302739 GTCGAACTTG--GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTT 302796 |||| |||| |||| || ||||| |||| || | | | ||||| || || ||||| Sbjct 4661 GTCGTCCTTGCCGTAA--TGAGGCAGCGTCCGGTGGTGAAATCCGTACGGAATGCGCTTC 4604 Query 302797 CCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCC 302856 || || ||||| || || || | |||| ||| ||||| ||||| || || | ||| Sbjct 4603 CCCTCCACGTTTTGTTGCCCGACACACGCAATAATCTGGGAAATGTTCAAGTACGACCCC 4544 Query 302857 TTGGAGCCAG 302866 ||||| |||| Sbjct 4543 TTGGACCCAG 4534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471700286478477