Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2971 152 5e-32 seq3609 129 5e-25 seq916 122 8e-23 seq5958 105 6e-18 seq2657 100 3e-16 >seq2971 Length=8032 Score = 152 bits (168), Expect = 5e-32 Identities = 723/1126 (64%), Gaps = 67/1126 (6%) Strand=Plus/Minus Query 138355 TTCATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGT-ATTGTTGCAATATT 138413 || ||||||||||| |||||||| | || | | ||||| || | || | || Sbjct 4397 TTGATCTCCCACACAGTCTTGTACACTTCCTTGACGTC-CGCGGGGATGGACGCGACGTT 4339 Query 138414 TTGAATGCTCCCGTTGGCC-GCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCA 138472 ||||| ||| ||| | | |||| ||| | || | | ||| ||| ||||| || Sbjct 4338 TTGAACGCTGCCGCGGTCATGCAA-GATCTGGTTGCGGACGTCGCTGTTCCACAGACCCA 4280 Query 138473 ACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTC 138532 | ||||| || || |||| || |||| | || ||||| || || | || | Sbjct 4279 GCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGATGGTGAATTCGCCCGCGAGGACGC 4220 Query 138533 GACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAG 138592 | || ||| |||||| || || ||||| | ||||||||||| || || ||||| | Sbjct 4219 GGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGATTCGTTGTTGCCGAGGATCTGCG 4160 Query 138593 CCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA 138652 | |||| ||| || |||||| |||| | || || || || | ||||| | | Sbjct 4159 CGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATGCCGTGCTGGGCCA 4100 Query 138653 TTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGT 138712 | | |||||||||||| ||| ||||||| ||| || | | ||||| |||| Sbjct 4099 CTTGCGCCTTGAGCGACGCCCAATCCCACAGATCCGACGGCGTGACGCCCCACAAGTCGT 4040 Query 138713 ACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAA-CTCT 138771 |||| ||| | ||| ||| |||| ||| ||||| | ||||| || |||| Sbjct 4039 ACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACGGCCCTTGGCTCT 3980 Query 138772 TGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGA 138831 || || | || || || || | || | | ||| || ||||| |||||||| Sbjct 3979 TG-GCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAAAGATCTGCTGG 3921 Query 138832 TTGAGCAATCGGGCCTCGGCGCTCTCGTACGG------CATGCGGAGCATCGTGAACGCG 138885 || |||| ||| || | |||| ||| |||| ||| |||||||| Sbjct 3920 TTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGA------TGAACGCG 3867 Query 138886 TCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG 138945 ||||| || ||||| ||||| | |||| ||||| ||||||| || ||| ||||| Sbjct 3866 TCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTT----GCTGTTGCG 3811 Query 138946 -GCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCAC 139001 ||||| ||| || |||||||| || ||||| | ||||| | || | |||||| Sbjct 3810 CGCTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCAC 3751 Query 139002 CTTAG---TCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGAC 139058 ||| | || | ||| | || |||| || | | || || || Sbjct 3750 CTTGGCGATCTTGTGC---AGGTGTGCAAAGTCAAA------CACGGCGT--TC------ 3708 Query 139059 GTCGACAAATTTGTTGACACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGT-CGGG 139115 |||||||| || ||||| || || || | ||||||||| |||||||||| | | Sbjct 3707 -TCGACAAACTT--TGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTG 3651 Query 139116 GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTG 139175 ||| |||| |||| || ||| ||||| || |||||||||| || | || || Sbjct 3650 CTCG-TGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTG 3592 Query 139176 TTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCAC 139235 || ||| || | ||| || ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 3591 CTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGAC 3532 Query 139236 TTGTGTCTCTATAAT---GAATTTGAAC--AAGTCCCTAGCTTGTATTTGACGCACGTAA 139290 ||| | ||| | || ||| ||| | ||| | | || || ||||| Sbjct 3531 TTGCGACTCCAAGATGGCGAACCACAACTGCTGCGCCTTGATCGTCTTGCGCGCAC---- 3476 Query 139291 AGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGA 139349 | | || ||||||||| | | | || | ||||| ||| | || || || Sbjct 3475 -GGCCTTCCGACTCGTACTTGTGGAACAGCGCCTCGAACTCG-GCGCCCCAGCATTCGTG 3418 Query 139350 AAGATCGCGACACTT-GTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCC 139408 || | || | ||| | ||||| | | ||| ||||||||| || ||||||| Sbjct 3417 CAG-CCCCGGCGCTTCATTGGGACAGAACAAGCTCCAGTCGCCGTTCGACTCGACGCGCT 3359 Query 139409 TCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC 139454 |||||||||||||||||||||||| ||| | | ||| ||||| || Sbjct 3358 TCATGAACAGATCCGGAATCCACATGGCGTAGAACAAGTCGCGGGC 3313 >seq3609 Length=34764 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || ||||| || || || || ||||| || || || | Sbjct 21583 GATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTC 21524 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||| ||||| |||||||| ||||| ||||| Sbjct 21523 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 21464 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| | |||||||| || || || ||||| || | | | || ||||| || Sbjct 21463 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 21404 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| ||||| || || ||||||||||| Sbjct 21403 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCG 21368 >seq916 Length=99455 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || || ||| | || || ||| | || Sbjct 61066 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCGTCC 61007 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||||||||| ||||| || || || || || Sbjct 61006 GACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 60947 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || || |||| ||| | | | || || || ||| Sbjct 60946 CAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTACAAC 60887 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || |||||||||||||| | ||||||||| | || ||||||| || || Sbjct 60886 ATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGGTGG 60837 >seq5958 Length=27980 Score = 105 bits (116), Expect = 6e-18 Identities = 152/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | || ||| | || || || || || |||||||| || ||| | Sbjct 18495 ACCATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCT 18554 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || |||||||| |||||||| ||||| || || || || Sbjct 18555 TCCGACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGAC 18614 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GAT 24877 || || |||||||||||||| || || ||| |||| || || | || | ||| || Sbjct 18615 CAGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGA--CG-GCCGCACGCTCAGCGAC 18671 Query 24878 TATAACATTCAAAAGGAATCGACACTACAC 24907 || ||||| |||||||| || || || ||| Sbjct 18672 TACAACATCCAAAAGGAGTCCACCCTCCAC 18701 >seq2657 Length=89683 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | || ||| | || || ||||| || ||| | || || ||| | Sbjct 86350 ACCATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCA 86291 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || ||||||||||| ||||| ||||| || || || || Sbjct 86290 TCCGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGAC 86231 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | ||||||||||| || || |||| || | | || || || Sbjct 86230 CAGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTAC 86171 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| |||||||||||||| | ||| | ||| | || |||| || || || Sbjct 86170 AACATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGGGGG 86118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449862614837880