Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3609 134 9e-27 seq2657 95.1 8e-15 seq5958 91.5 1e-13 >seq3609 Length=34764 Score = 134 bits (148), Expect = 9e-27 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || ||| |||| | || |||||||||||||| || || Sbjct 21391 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAA 21450 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| || | || | || |||||||| | || ||||| |||||| Sbjct 21451 GATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTT 21510 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || || |||||| || | |||||||||||| || ||||||||||| || Sbjct 21511 GTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGAC 21570 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 21571 GAAGATTTGCAT 21582 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| ||| | || | || ||||||||||| || || || Sbjct 21619 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGTTGCTTCCCCGCAAA 21678 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || || ||||| | || | || |||||||| | || || || |||||| Sbjct 21679 GATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTT 21738 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || || |||||| || | |||||||||||| || ||||||||||| || Sbjct 21739 GTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGAC 21798 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 21799 GAAGATTTGCAT 21810 >seq2657 Length=89683 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| | |||| | || |||| |||||| ||||| ||| Sbjct 86157 TCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAG 86216 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||||||||| | || | ||| |||||||| | || ||||| || ||| Sbjct 86217 ATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTG 86276 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | ||||| || | || ||||| | || ||||| || ||||| | ||||| || Sbjct 86277 TCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACG 86336 Query 34967 AAGATCTGCATG 34978 ||||| |||||| Sbjct 86337 AAGATTTGCATG 86348 >seq5958 Length=27980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||| | |||| |||||| || ||||| ||||| || |||| | || |||| || Sbjct 18701 GTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTG 18642 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| || || ||||||| || |||||||| | || | || |||||||| | || || Sbjct 18641 CTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 18582 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||| || ||| | ||||| || | || || || | || |||||||||||||| Sbjct 18581 TTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGT 18522 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 | ||||| || ||||| |||||| Sbjct 18521 CAACGTCTTCACGAAGATTTGCATG 18497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325668106480799