Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1997 105 6e-18 seq916 105 6e-18 seq3609 95.1 1e-14 seq2971 93.3 4e-14 seq5958 91.5 1e-13 >seq1997 Length=17169 Score = 105 bits (116), Expect = 6e-18 Identities = 334/503 (66%), Gaps = 21/503 (4%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835 |||||| | ||||| | |||||| ||| | | || |||| || ||||||||||| Sbjct 6019 AAGGCCAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCCGCGTACGCCGAGCGCATC 5960 Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCA-GTTTTGCCGCCATTTTTTA 46894 || || ||||| || |||||| | || || || || ||| ||| |||| |||| Sbjct 5959 GTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCT-CCATCTTTTG 5901 Query 46895 CATTAA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCG 46953 | || || | ||| | |||||||||||| ||||| ||||| | |||||||||| Sbjct 5900 GCTCAAGAAGCGCGGGC-TCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCGCGCG 5842 Query 46954 ACGAAGGACTACACACGGACTTTGCGTGTCTCTAT-TACAAGACGCGCGTGAATGAGAAA 47012 ||||||| || ||| |||||||| || || || ||| || || ||| || || Sbjct 5841 ACGAAGGCCTGCACTGCGACTTTGCATG-CTTGATGTACTCGAAGCTCGTCAACAAG--- 5786 Query 47013 TTAAACTCGGACACG---ATCC-TGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGA 47068 ||||||||| |||| ||| ||| | | || |||| ||||| ||| | Sbjct 5785 ---CTGTCGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTGAG-ATCGAGAAGCA 5730 Query 47069 GTTTTTTACTGCG-GCGC-TGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGC 47126 |||| | | ||| | || ||||||| | | | ||||||||| | | |||||| Sbjct 5729 GTTTGTGA--GCGAGAGCTTGCCCGTGGAACTCATTGGCATGAACTCGGCGCTCATGTGC 5672 Query 47127 GAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTT 47186 ||||| |||||||| || ||||| || | | ||| || || || ||| Sbjct 5671 GAATACATTGAGTTCTGCGCCGATCGCCTCCTCGAATCGCTTGGCGCCCCCAAGCTCTTT 5612 Query 47187 AATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTT 47246 || || || ||||| | ||| ||| || || | | ||||||||||| ||| Sbjct 5611 GCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAGGCAAAACCAACTTT 5552 Query 47247 TTCGAGAAACGAGTCGGAGAGTA 47269 |||||||| || || || ||||| Sbjct 5551 TTCGAGAAGCGCGTGGGCGAGTA 5529 >seq916 Length=99455 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | ||||| || | | || || ||||| |||||||||||||||| ||| Sbjct 60846 CGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTG 60905 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | || || |||| | |||| | ||||| || || || || |||||| Sbjct 60906 CGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCT 60965 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || ||||| || | | || | | |||| ||| ||||| || | | Sbjct 60966 TCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAAC 61025 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| ||| || | |||||||||||| Sbjct 61026 GTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 61066 >seq3609 Length=34764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||||||| | | | ||||| || || |||||||||||||||| ||| Sbjct 21589 ACGCAGGCGAAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 21648 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| || || || || | | |||| || |||||||| || || || ||||| Sbjct 21649 ACGACCGTCTTCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCC 21708 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || || | | || | | || | ||||| || |||| Sbjct 21709 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAG 21768 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| || ||||| Sbjct 21769 GGTTATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 >seq2971 Length=8032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 288/437 (66%), Gaps = 9/437 (2%) Strand=Plus/Minus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCC---GC 147940 |||||||||| ||||| || || | ||| | ||| | || || || |||||||| || Sbjct 3204 AGATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGC 3145 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 ||||||| || | ||| | ||| ||| ||||| || | |||||| | ||| | | Sbjct 3144 CCTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGG 3085 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | |||||||| || | |||| | ||| || | | ||| | ||| |||| Sbjct 3084 AGGACCCGTTGGTCCCGCGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGC 3025 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 |||||||||| | |||| || ||| || || | |||||| |||||| || | Sbjct 3024 CAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTT 2965 Query 148121 CGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| |||| || | | |||| | || ||||| ||| ||| ||| |||| Sbjct 2964 CGATGGAATCGTCCTTCATGGACAAG-AGGAAGCACGACGACAGTTGAGGACGAGGCGTG 2906 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT-CATGCGATA 148238 || || ||| | ||| || ||||||| || || | ||| ||| | || || Sbjct 2905 CCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAGTACAATTGCGACATGTACTCG-TA 2847 Query 148239 CGT-CTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCA 148297 ||| ||| | || | || ||||| || ||| ||||||| || |||||||||| || Sbjct 2846 CGTGGTCAGCACCGAC-TCAATGTCTTCTTTGTGGATGCCCACAGCCACGCGCATGATCA 2788 Query 148298 TGTGCTGTGGTCGTTCG 148314 ||| || || || ||| Sbjct 2787 AGTGTTGGGGGCGCTCG 2771 >seq5958 Length=27980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||||| | || || ||||| | ||| || || | | Sbjct 18691 GACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCA 18632 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| || || || || |||||||| || || ||| ||||| |||| Sbjct 18631 AAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCACG 18572 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | |||| || ||||| |||| ||| | || || || |||| || || Sbjct 18571 TTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTC 18512 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 18511 ACGAAGATTTGCATG 18497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476574137521560