Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq916 143 2e-29 seq5958 129 5e-25 seq2657 129 5e-25 seq3609 102 7e-17 >seq916 Length=99455 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || ||||| |||||||| |||||||| ||| |||||| || | || || Sbjct 60857 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 60916 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||||| || ||||| ||||| ||||||||||| | || | || |||||||| Sbjct 60917 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 60976 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||||||||||| | |||| | | || |||| || |||||| |||| |||||| || | Sbjct 60977 GATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 61035 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||||||| || || || |||||||| Sbjct 61036 TCCCAGTCAAAGTCTTGACGAAAATCTGCAT 61066 >seq5958 Length=27980 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| ||| | || || |||| |||| |||||| || ||||| Sbjct 18689 CTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAA 18630 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || |||||||| ||||||||||||| || Sbjct 18629 GATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGT 18571 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || |||| | |||||| || | |||||| || || |||||||| || |||| Sbjct 18570 TGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCA 18511 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 18510 CGAAGATTTGCAT 18498 >seq2657 Length=89683 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | || ||||| |||||||| |||||||| || | Sbjct 86121 CCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTC 86180 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| |||| ||||| || ||||| || | || |||||||||| ||| Sbjct 86181 AACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGA 86240 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||||||||||||| |||| | | || |||| | |||||| Sbjct 86241 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCAC 86299 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| ||||| |||||||| || || || || || ||||| Sbjct 86300 ATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 86347 >seq3609 Length=34764 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | |||||||||||| | || |||||| || |||||||||||| | Sbjct 21356 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21415 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||| ||||| |||||||| || | || ||||| || | ||| Sbjct 21416 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 21475 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 | | ||||||||| |||||||||||| Sbjct 21476 ATTCCTTCCTTGTCCTGGATCTTTTGCTT 21504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450758545162680