Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5958 161 1e-34 seq916 159 3e-34 seq2657 127 2e-24 seq3609 109 6e-19 seq2971 96.9 4e-15 seq4437 86.0 6e-12 >seq5958 Length=27980 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| |||||||| ||||||||||||| | ||| | ||| || | ||| Sbjct 18701 GTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTG 18642 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| |||||||||||||| || || || |||||||| || |||||||| || Sbjct 18641 CTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 18582 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || ||| | | |||||| | |||||||||||| || ||||| || || || Sbjct 18581 TTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGT 18522 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| Sbjct 18521 CAACGTCTTCACGAAGATTTGCAT 18498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| |||||||| ||||||||||||| | ||| | Sbjct 18814 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGG 18755 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATG 134609 ||| || | ||| ||||| ||||| |||||||||||||| || || || ||| Sbjct 18754 CCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATG 18701 >seq916 Length=99455 Score = 159 bits (176), Expect = 3e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | ||| ||||||||||| ||||||||||||| | |||| | Sbjct 60849 AGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGG 60908 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || ||||| ||||| ||||| |||||||| || ||||| |||||||| Sbjct 60909 CCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCC 60968 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||||| ||||| ||| | | |||||||| ||||||||| | || Sbjct 60969 TTGTCTTGGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTG 61028 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || ||||| || |||||||| ||||| || Sbjct 61029 ATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATT 61069 >seq2657 Length=89683 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||||||||| | ||| ||||||||||| ||||||||||| | |||| ||| | Sbjct 86130 AGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAAC-GTGCG 86188 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || | || ||||| ||||| || | || ||||| || || || || ||||| Sbjct 86189 GCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTC 86248 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || ||||| || || ||| | | |||||| | |||||| || | || Sbjct 86249 CTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGT 86308 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || ||||| |||||||| Sbjct 86309 GATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 86347 >seq3609 Length=34764 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| || ||||||||||||| | ||| || ||| || || || Sbjct 21608 TGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGTTGC 21667 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | ||||| || || || || |||||||| || || || || || Sbjct 21668 TTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTC 21727 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || ||||| ||| | | ||| || | || |||||||| || ||||| || ||||| Sbjct 21728 TGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTG 21787 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 21788 AGGGTCTTGACGAAGATTTGCAT 21810 >seq2971 Length=8032 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/428 (66%), Gaps = 15/428 (4%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 |||||| || | |||||||||| |||||||| ||| ||||||||||| | | || Sbjct 2781 CAACACTTGATCATGCGCGTGGCTGTGGGCATCCACAAAGAAGACATTGAGTCGGTGCTG 2840 Query 7624 GAAACGTACCAAATGATGTC---TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTT 7680 |||||| | ||||| ||| | || || ||||| | || ||| |||| Sbjct 2841 ACCACGTACGAGTACATGTCGCAATTG---TACTTCACCCACGCGACCCCGACCTTGTTC 2897 Query 7681 GCCGCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGA 7739 ||| ||||| | || |||||| |||| ||||| || | | ||||| || || Sbjct 2898 AACGCCGGCAC-GCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACGA 2956 Query 7740 CAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGG 7799 |||||| || || ||| |||| || | || || |||||||| | | || Sbjct 2957 TTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTGG 3016 Query 7800 CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCA 7858 ||| || || ||||| | || || | ||||||| | ||| || ||| | |||| Sbjct 3017 CGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCTACATTCGCG-GGACCA 3075 Query 7859 ACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATG 7918 |||| ||| ||| | |||||| | || |||||||| || | | || | | Sbjct 3076 ACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTACG 3135 Query 7919 TAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCT-GCCATCTATTTGGAGCCGTGGCAC 7974 | |||||| |||||||||||| |||| | || | ||||| || |||||||| ||||| Sbjct 3136 TGGACCAGGGCGGGGGAAAGCGC-AAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCAT 3194 Query 7975 GCGGACAT 7982 || ||||| Sbjct 3195 GCCGACAT 3202 >seq4437 Length=14678 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG-CCAACGGTGTGAGA 134557 |||| ||| || || || || || | ||| |||||||||||| |||||| | | Sbjct 6720 CGCAGCACCAGATGCAGGGTCGAGTGGGATTGGATGTTGTAGTCGGCCAACGTCCGGTCA 6661 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || ||||||||||| || ||||||||||| |||||||| || |||||||| || || || Sbjct 6660 -TCTTCGAGCTGTTTTCCAGCAAAAATCAAGCGCTGCTGGTCTGGCGGTATACCCTCCTT 6602 Query 134618 TTCTTG 134623 ||||| Sbjct 6601 GTCTTG 6596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505359098956920