Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1997 93.3 6e-14 >seq1997 Length=17169 Score = 93.3 bits (102), Expect = 6e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| ||||| || ||||| || || ||||| || || | || | |||||| || | Sbjct 5806 ACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGA 5865 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | | || || ||||| || || ||||| ||||||||||| |||| |||| || || || Sbjct 5866 ACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAACGAACCG 5924 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAAC 39762 || |||||||||||||| || || || || || || Sbjct 5925 GAGAAGAAGATGCCTTCCACGGCGGCGAACGCGAC 5959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686855384254440