Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1997 158 1e-33 >seq1997 Length=17169 Score = 158 bits (174), Expect = 1e-33 Identities = 305/440 (69%), Gaps = 15/440 (3%) Strand=Plus/Minus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 ||||||| ||||||||||||||||| || ||||| ||||| ||| | ||| || Sbjct 6243 TGGCGTTCTTTGCTGCGAGCGACGGCATCGTCAACGAAAACCTGGCCATGAACTTTA-GC 6185 Query 43914 AA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | || || || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 6184 AATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGGTTCCAAATCGCCATCGAAAAC 6125 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || || |||||| ||||| || || || || || |||||||| || | ||||||| Sbjct 6124 ATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATACATCAAGGACCCGACCGAGAAG 6065 Query 44033 CATCGATTGTTTAATGCGATAGAAA-CAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 | || || | || || |||| || | | |||| | | | || || ||||||| Sbjct 6064 GACCGCGTGCTGCGCGCCATCGAAACCATTCCGTGCG-TCATGCGCAAGGCCAACTGGGC 6006 Query 44092 CCTTAAATG----GATAAATTCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145 || || || || || ||| | | | | || || | |||||||| || Sbjct 6005 GCTCAAGTGGTGCGACAA---CAAGCGCGCCGCGTACGCCGAGCGCATCGTCGCGTTCGC 5949 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAAC 44204 | ||||||||||| ||||| || || ||||| ||| |||| |||||| | ||||| | Sbjct 5948 CGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGC-TCCATCTTTTGGCTCAAGAAGC 5890 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | || | ||||| || || |||| || || || | || || || |||||| | | Sbjct 5889 GCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCGCGCGACGAAGGCCTGC 5830 Query 44265 ATTGCGATTTTGCTTGCTTG 44284 | ||||| ||||| |||||| Sbjct 5829 ACTGCGACTTTGCATGCTTG 5810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425865507105