Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2971 131 2e-25 seq1997 102 1e-16 >seq2971 Length=8032 Score = 131 bits (144), Expect = 2e-25 Identities = 290/429 (68%), Gaps = 7/429 (2%) Strand=Plus/Minus Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA---CGCCCAGC 111717 ||| || || ||||| ||||| | || | |||| || ||||| || | ||| | Sbjct 3203 GATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGCC 3144 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 || | || ||||| || ||| |||| || || |||||||| ||||| || || | || Sbjct 3143 CTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGGA 3084 Query 111778 TTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCC 111836 || || ||||| ||||| || | || |||| | | | ||||||| || | Sbjct 3083 GGACCCGTTGGTCCCGCGAATGT-AGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGC 3025 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 |||| || ||||||||||| || || |||||| | | | | || | |||||||| | Sbjct 3024 CAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTT 2965 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 ||| || || ||||| ||| | |||||||| |||| || || | || || | Sbjct 2964 CGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTGC 2905 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC-TTGGGACATCTTGTCGTAT 112015 | || ||||| | ||| || || ||||| |||| ||| ||| ||||| | ||||| Sbjct 2904 CGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAG-TACAATTGCGACATGTACTCGTAC 2846 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 || || || || ||||||||||| ||||||||| | || || ||||||| || | Sbjct 2845 GTGGTCAGCACCGACTCAATGTCTTCTTTGTGGATGCCCACAGCCACGCGCATGATCAAG 2786 Query 112076 TACTGTGGG 112084 | || ||| Sbjct 2785 TGTTGGGGG 2777 Score = 127 bits (140), Expect = 3e-24 Identities = 474/734 (65%), Gaps = 22/734 (3%) Strand=Plus/Minus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||| ||| |||| | | || || | |||| || ||||| |||| || || | Sbjct 4051 CCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACG 3992 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 |||||| | || | ||| | || |||| || ||||| || |||||||||| Sbjct 3991 GCCCTTGGCTCTTGGCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAA 3932 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAA 111047 |||| | |||| | |||||||||| | || || || | ||| | | || | Sbjct 3931 AGATCTGCTGGTTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGATGA 3872 Query 111048 ATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTC 111107 | | || || || ||||| || || | || || || | ||| ||||| || || | Sbjct 3871 ACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTTGCTGTTGC 3812 Query 111108 GCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 |||| | | ||| ||| | || ||| || || ||| || || | || || | Sbjct 3811 GCGCTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCA 3752 Query 111168 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATAC 111226 ||| | ||| | || || | | || | ||||| | ||| |||| |||| || Sbjct 3751 CCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACACGGCGT-TCTC------GACAAAC 3699 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 |||| || ||||| || ||||| ||||| || ||| || ||||| |||||||| Sbjct 3698 TTTGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTGTACTCG 3639 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | || || || |||||||| ||| ||||| |||| |||| ||||| ||| Sbjct 3638 ATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGTTGGACTTG 3579 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||||||||||||||||| |||||||| ||||| || || || || || | | Sbjct 3578 CCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCGACTCCAAG 3519 Query 111407 ATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTC 111462 || || ||| ||| | ||| || | || | ||| || || || |||| ||| Sbjct 3518 ATGGCGAACCACAACTGCTGCGCCTTG----ATCGTCTTGCGCGCACGGCCTTCCGACTC 3463 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCT 111521 |||||| | | || || || ||||| | ||| | || ||| || || || || | Sbjct 3462 GTACTTGTGGAACAGCGCCTCGAACTCGGCGCCC-CAGCATTCGTGCAGCCCCGGCGCTT 3404 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTC 111579 | |||||||| | ||| | | | ||| ||| || ||||||||||| || || Sbjct 3403 CATTGGGACAGAACAAGCTCCA--GTCGCCGTTCGACTCGACGCGCTTCATGAACAGATC 3346 Query 111580 TGGAATCCACAGGG 111593 |||||||||| || Sbjct 3345 CGGAATCCACATGG 3332 >seq1997 Length=17169 Score = 102 bits (112), Expect = 1e-16 Identities = 305/455 (67%), Gaps = 22/455 (5%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCAT 122429 || || || || |||||||| || |||||||| || || | ||| | | | | ||||| Sbjct 5529 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGA-TCATGTCCAT 5587 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGT--GGCACCCCAACTTGTTTGAGGAGA 122487 ||||||| || ||||| || |||| | | || | |||| || |||||| Sbjct 5588 CCAGTCAAAGGGGTTCTTGGCCG--CAAAGAGCTTGGGGGCGCCAAGCGATTCGAGGAGG 5645 Query 122488 CGATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||||| | || | |||||||||| ||| |||| | | |||||||| || ||||| || Sbjct 5646 CGATCGGCGCAGA-ACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAG-TT 5703 Query 122547 ACATGGGAGTGCG-TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 || ||| || || | ||| ||||| |||||||| || || || || Sbjct 5704 CCACGGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCT 5763 Query 122606 CGTGGATA---GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---G 122659 ||||||| || || | | | | | | ||| || ||| || | || | | Sbjct 5764 CGTGGATGCGCGTGTCCG-ACAGCTTGT-TGACG---AG-CTTCGAGTACATCAAGCATG 5817 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 |||| || ||| || || || || || || || ||||| || ||||| | || || | Sbjct 5818 CAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCCCG 5877 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 122779 ||||||| || |||||||| | |||| | || | |||||| || |||||||||||||| | Sbjct 5878 GCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGATGC 5937 Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCG 122814 | ||||| || ||||| | | ||| |||||| Sbjct 5938 CTTCCACGGCGGCGAACGCGACGATGCGCTCGGCG 5972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627983162661600