Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2971 131 2e-25 seq1997 109 6e-19 seq177 95.1 1e-14 >seq2971 Length=8032 Score = 131 bits (144), Expect = 2e-25 Identities = 290/429 (68%), Gaps = 7/429 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| || || || ||||||||||||| | || || || ||||||||||| || || Sbjct 2777 CCCCCAACACTTGATCATGCGCGTGGCTGTGGGCATCCACAAAGAAGACATTGAGTCGGT 2836 Query 104281 CTTGGAGACATACGACAAGATGTCCCAA-GGTATGTTCATTCACGCAACACCAACCCTCT 104339 || || ||||| | ||||| ||| ||| |||| ||||| || || ||| | | Sbjct 2837 GCTGACCACGTACGAGTACATGTCGCAATTGTA-CTTCACCCACGCGACCCCGACCTTGT 2895 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || || | || ||| |||| |||||||| | ||| ||||| | Sbjct 2896 TCAACGCCGGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACG 2955 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 | || ||| | |||||||| | || | | | | |||||| || || |||||||||| Sbjct 2956 ATTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTG 3015 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 104518 | || ||||| || ||||||| | | | |||| || | || ||||| ||||| Sbjct 3016 GCGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCT-ACATTCGCGGGACC 3074 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || || ||||| |||||||| || || |||| ||| || ||||| Sbjct 3075 AACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTAC 3134 Query 104579 GTAAATCAAGCTGGGCG---TCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | ||| | || ||||| || |||| | || | ||||| ||||| Sbjct 3135 GTGGACCAGGGCGGGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCAT 3194 Query 104636 GCGGATATC 104644 || || ||| Sbjct 3195 GCCGACATC 3203 >seq1997 Length=17169 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || ||||| || |||| || || || || || ||||||||||| ||||| |||||| Sbjct 5971 GCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGC 5912 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | ||||||||||||||| || |||||||| || || | ||||| ||||| || Sbjct 5911 TCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTC 5852 Query 94921 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| || ||||| || || ||| || ||||| Sbjct 5851 ATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGC 5817 >seq177 Length=11201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 168431 GTAAAGATATACCTCGTTTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACTGA 168490 ||||||||||||| | | ||| ||||| || ||| ||| ||||| ||||||||| Sbjct 979 GTAAAGATATACCGGGCACTCGCCGCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGA 1038 Query 168491 CCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACA 168550 ||| |||| | || || | ||||| || || | | |||| | ||||| |||||| Sbjct 1039 CCAGACGGAACCAGCAGTGGCACGTTGTTGGAGCCGACGAAGTCCTGCGCCATGTTGACA 1098 Query 168551 ATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCC 168610 |||||| | || || | || ||||| |||||||| | | || ||| | | Sbjct 1099 ATCGTGCTCAATAGCGACGCCTCGCCGTGATGGTACGCCGTGTGTTCGGCGCAGTACCCG 1158 Query 168611 GCCAACTGCGCCACTTTCATCTCATCCTTGA--GATTCTTGT-GGAAGCATGCGTACATA 168667 |||| || || |||||||| ||||||| | | || | |||||||| ||| Sbjct 1159 GCCAGTTGGGCGACTTTCAT---TTCCTTGACCAAGTGCCGTCGAAAGCATGCAAACAAT 1215 Query 168668 ACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 |||||||| || || |||||||| || || Sbjct 1216 ACCTTGCGCTGGGACGGCTTGAGTCCGTC 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583215444182040