Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2971 244 1e-59 seq1997 131 2e-25 >seq2971 Length=8032 Score = 244 bits (270), Expect = 1e-59 Identities = 508/741 (69%), Gaps = 24/741 (3%) Strand=Plus/Plus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 || ||||| |||||||| ||||||||| |||||||| || |||| |||||| || Sbjct 3529 CAAGTCGAAACCGGCACGCCGTACATGCTGTACAAGGATGCGTGCAACGGCAAGTCCAAC 3588 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 ||| ||||| | ||| ||||||||||||||||| |||| || ||||| || || | Sbjct 3589 CAGCAGAACCTGGGCACGATCAAGTCGTCCAACTTGTGCTGCGAGATCATCGA-GTACAC 3647 Query 19913 AAGC-CGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAA 19971 ||| |||||| |||||||| || |||||||| | ||| | | || ||| | Sbjct 3648 GAGCAAGGACGAAGTGGCCGTGTGCAACTTGGCGTCCATCGCGCTGTCAAAGTTTGTCGA 3707 Query 19972 GGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCT 20031 | | || || |||||||| | || || || | || ||| |||||| || || Sbjct 3708 GAACGCCGTGTTTGACTTTGCACACCTGCACAAGATCGCCAAGGTGGTCACGACCAACCT 3767 Query 20032 GAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCG 20091 || || ||||| |||| |||||| | | | | |||||||| || ||||| Sbjct 3768 CAACAAGGTGATCGACGTCAACTATTACCCCATCCAAGAAGCGCGCAACAGCAACATGCG 3827 Query 20092 CCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCT 20151 |||||| ||||||| ||| |||||||| ||||| ||||||| ||||| | | || Sbjct 3828 CCACCGCCCGATCGGGATTGGCGTCCAAGGCCTTGCCGACGCGTTCATCCTCATGGGGTA 3887 Query 20152 CTCATTCGA--CGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTAC 20209 ||| ||||| || | ||| | | | ||| ||| || ||||| || || | ||| Sbjct 3888 CTCGTTCGAGTCGGT-GGAAGCCAAG-GTGCTGAACCAGCAGATCTTTGAAACCATCTAC 3945 Query 20210 CACGCGGCCCTCCTGGAATCGTGC---GAACTCGCCAAAGAG-GACGGCCCGTACGAGAC 20265 ||||| || | ||||| ||| | ||||||||| ||||| | || ||||||||||| Sbjct 3946 CACGCCGC---CATGGAAACGTCCATGGAACTCGCC-AAGAGCCAAGGGCCGTACGAGAC 4001 Query 20266 GTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCAC--- 20322 | | |||| || |||| | |||| | ||||| ||| ||||||||||||| Sbjct 4002 CTACGAGGGCTCCCCCGTGAGTCAGGGCAAGTTCCAGTACGACTTGTGGGGCGTCACGCC 4061 Query 20323 -TGAGA-ATGAGTTTTGGAGCG-CCCTCAAGGTTGAGATCAAGACC--CACGGGCTTCGC 20377 | || || | | | ||| | ||||||| | | | || ||||| | ||| Sbjct 4062 GTCGGATCTGTGGGATTGGGCGTCGCTCAAGGCGCAAGT--GGCCCAGCACGGCATCCGC 4119 Query 20378 AACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAAC 20437 |||||| ||||| | || |||||||| || || || ||||| |||||| | || |||||| Sbjct 4120 AACTCGCTGCTCTTGGCCCCCATGCCCACGGCGTCCACCGCGCAGATCCTCGGCAACAAC 4179 Query 20438 GAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 || | ||||||||| ||| ||||||| ||| || || || || || || ||| Sbjct 4180 GAATCAATCGAGCCGTTTACGTCCAACATGTACAGCCGCCGCGTCCTCGCGGGCGAATTC 4239 Query 20498 GTCATGGTAAACAAGCACCTG 20518 ||| || |||||| || || Sbjct 4240 ACCATCGTTAACAAGTACTTG 4260 Score = 208 bits (230), Expect = 8e-49 Identities = 310/436 (71%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 ||||||||| ||||| ||||||| || ||||||||||| ||||||||||| || ||||| Sbjct 3203 GATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGCC 3144 Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGC 79595 ||||| ||||| || || |||| |||||| || || |||||||| | ||| |||| || Sbjct 3143 CTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGGA 3084 Query 79596 GACGCCGTTCGTCCCGTTGAT-TCG-TGTACCGCTCGCCCGAATGTTCGAGCAGTGGATT 79653 | ||||| |||||| || | | ||| | | || || ||||| | || | Sbjct 3083 GGACCCGTTGGTCCCGCGAATGTAGCTGT--TGGTGGCGCGGATGTTGTGGATGTTCACG 3026 Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || ||||| || | ||||||||| ||| ||| || | ||| | || |||||||| || Sbjct 3025 CCAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCT 2966 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 ||||| || ||||||||||| | | |||||||| ||||| || || ||| Sbjct 2965 TCGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTG 2906 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 ||||||||||| | |||||| |||||||| |||||| || ||| ||| |||||| Sbjct 2905 CCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAGTACAATTGCGACATGTACTCGTAC 2846 Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893 || | || | | ||| || ||||||||| || || |||||||||| | | Sbjct 2845 GTGGTCAGCACCGACTCAATGTCTTCTTTGTGGATGCCCACAGCCACGCGCATGATCAAG 2786 Query 79894 TACTGGGGCGTCTCGC 79909 | ||||| ||||| Sbjct 2785 TGTTGGGGGCGCTCGC 2770 Score = 194 bits (214), Expect = 2e-44 Identities = 489/731 (67%), Gaps = 22/731 (3%) Strand=Plus/Minus Query 78495 GTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGG 78554 ||||| ||| ||| ||||| || ||| ||||| ||| ||||||| ||| |||| Sbjct 4251 GTTAACGATGGTGAATTCGCCCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGG 4192 Query 78555 CTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGAC 78614 ||||| | |||||||| || | |||||| ||||| || || || |||||||| || | Sbjct 4191 CTCGATTGATTCGTTGTTGCCGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAA 4132 Query 78615 CAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG----GCCG--TCCCA 78668 || || || || || | || ||| | | |||| || ||| ||||| Sbjct 4131 GAGCAGCGAGTTGCGGATGCCGTGCTGGGCCACTTGCGCCTTGAGCGACGCCCAATCCCA 4072 Query 78669 AAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGA 78728 | || || || || ||||||| ||| || | | |||| | | || || Sbjct 4071 CAGATCCGACGGCGTGACGCCCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGA 4012 Query 78729 CCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG-ACTCGAGCAGGG 78787 |||| | | |||||||| | || | |||||||||||| |||| || || || Sbjct 4011 GCCCTCGTAGGTCTCGTACGGCCCTTGGCTCTTGGCGAGTTC-CATGGACGTTTCCATGG 3953 Query 78788 CCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCG--TC 78845 | |||||||| | | || ||||| || ||| ||| | | | ||| | || || Sbjct 3952 CGGCGTGGTAGATGGTTTCAAAGATCTGCTGGTTCAGCAC-CTTGGCTTCCAC-CGACTC 3895 Query 78846 GAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGG 78905 |||||| || | | ||||| | ||||| ||||| |||||||| || ||||||| Sbjct 3894 GAACGAGTACCCCATGAGGATGAACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGG 3835 Query 78906 TCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGAC 78965 ||||||||||||||||| || || || | | | | |||||| |||| ||||| || Sbjct 3834 GCGGTGGCGCATGTTGCTGTTGCGCGCTTCTTGGATGGGGTAATAGTTGACGTCGATCAC 3775 Query 78966 GCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAA-AT 79024 ||| ||||| |||||| ||| | | || || || | || || ||||| | Sbjct 3774 CTTGTTGAGGTTGGTCGTGACCACCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACAC 3715 Query 79025 GATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATG----CCAGGTTGCACACGGCCGTC 79080 | | || || ||| | | | || |||||| ||| ||||||||||||| Sbjct 3714 GGCGTTCTC-GAC-AAACT---TTGACAGCGCGATGGACGCCAAGTTGCACACGGCCACT 3660 Query 79081 TCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCG 79140 |||||| ||| | ||||||||| || |||||| || ||||||||||| ||||| Sbjct 3659 TCGTCCTTGCTCGTGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCC 3600 Query 79141 ATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCG 79200 | ||||| ||||||| ||| |||| || || |||||||| |||||||||||| ||| Sbjct 3599 AGGTTCTGCTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCG 3540 Query 79201 GTCTCAACCTG 79211 || || || || Sbjct 3539 GTTTCGACTTG 3529 Score = 138 bits (152), Expect = 1e-27 Identities = 236/339 (70%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 19192 GTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTC 19251 || |||||| |||||||| |||||| | ||||||||||| ||| || || |||| Sbjct 2867 GTACTTCACCCACGCGACCCCGACCTTGTTCAACGCCGGCACGCCTCGTCCTCAACTGTC 2926 Query 19252 GAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAA 19311 | || ||||| || | |||||||| || ||| || || |||||||| || | || Sbjct 2927 GTCGTGCTTCCTCTTGTCCATGAAGGACGATTCCATCGAAGGTATCTACGACACATTGAA 2986 Query 19312 GGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCG 19371 | | || ||| ||| ||||||||| | || || || || | || | || ||||| Sbjct 2987 GAACTGTGCGTGCATTTCCAAGTGGGCTGGCGGCATTGGCGTGAACATCCACAACATCCG 3046 Query 19372 GTCGAGTGGTACA-CGA-ATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATG 19429 | | ||| | | || ||||| ||||| || |||| ||| | || ||| Sbjct 3047 CGCCACCA--ACAGCTACATTCGCGGGACCAACGGGTCCTCCAACGGGATCATTCCCATG 3104 Query 19430 CTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGC 19489 || || || |||||| |||| || | ||||| ||||||| || || || |||||||| Sbjct 3105 CTTCGGGTGTTCAACGACACTGCTCGCTACGTGGACCAGGGCGGGGGAAAGCGCAAGGGG 3164 Query 19490 TCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 ||||||||||| ||| | ||||| ||||| || ||| || Sbjct 3165 TCGTTCGCCATGTACTTGGAGCCTTGGCATGCCGACATC 3203 >seq1997 Length=17169 Score = 131 bits (144), Expect = 2e-25 Identities = 312/462 (68%), Gaps = 11/462 (2%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCAT-TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATT 59735 || |||||| || | ||||||| | || ||||| ||||| || ||||| || || || Sbjct 6273 ACAACGAGC-GCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATC 6215 Query 59736 GTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 || | ||||| | | |||||||||| ||| || || || | ||||||| || | Sbjct 6214 GTCAACGAAAACCTGGCCATGAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGC 6155 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 || || | || || ||| || ||| |||||||| || |||||||||| | || Sbjct 6154 TTTTATGGGTTCCAAATCGC-CATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCAT 6096 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913 ||| | | ||||||| ||| ||||||| | || | || ||||| || || | Sbjct 6095 CGACACATACATCAAGGACCCGACCGAGAAGGACCGCGTGCTGCGCGCCATCGAAACCAT 6036 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCAT--- 59970 || || || | | || || | ||||| | ||||| || | | ||| Sbjct 6035 TCCGTGC-GTCATGCGCAAGGCCAACTGGGCGCTCAAGTGG-TGCGACAACAAGCGCGCC 5978 Query 59971 -CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 | | || | || || | || || || ||||||||| ||||||||||| || ||| Sbjct 5977 GCGTACGCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCG 5918 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||||| | || || |||||||| ||||| || ||||||||||||||| ||||| ||| Sbjct 5917 TTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAAC 5858 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 || || || || || ||||| ||||| || || |||||| Sbjct 5857 GAACTCATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGCA 5816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548482145340240