Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2971 199 4e-46 seq177 150 2e-31 seq1997 149 7e-31 seq124 91.5 2e-13 >seq2971 Length=8032 Score = 199 bits (220), Expect = 4e-46 Identities = 298/415 (72%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAG-ACGTA 53250 |||||||||| || |||| |||||| || ||| | | || || | ||| ||||| Sbjct 2791 TCATGCGCGTGGCTGTGGGCATCCACAAAGAAGACATTGAGTCG-GTGC-TGACCACGTA 2848 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 ||| | ||| ||| |||||| || ||||| || || ||| |||||||||| || || Sbjct 2849 CGAGTACATGTCGCAATTGTACTTCACCCACGCGACCCCGACCTTGTTCAACGCCGGCAC 2908 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | || ||||| ||||| |||||||| || | |||||||| || || ||||| || Sbjct 2909 GCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACGATTCCATCGAAGG 2968 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| || | ||| | ||||| ||| ||||||||| | || || || || | Sbjct 2969 TATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTGGCGGCATTGGCGT 3028 Query 53431 CCACTGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || | ||| |||| || | | || | || || ||| || ||||| | || Sbjct 3029 GAACATCCACAACATCCGCGCCACCAACAGCTACATTCGCGGG-ACCAACGGGTCCTCCA 3087 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||| || || |||||| |||| || || ||||| ||||||| | Sbjct 3088 ACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTACGTGGACCAGGGCG 3147 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604 | || ||||||||||||||||||||||| ||| | ||||| ||||| |||||||| Sbjct 3148 GGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCATGCCGACAT 3202 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||||| |||| || ||||| || ||||| || || |||||| | Sbjct 4111 GGCATCCGCAACTCGCTGCTCTTGGCCCCCATGCCCACGGCGTCCACCGCGCAGATCCTC 4170 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||||||||| | ||||||||| ||| ||||||| ||| ||||| ||| || Sbjct 4171 GGCAACAACGAATCAATCGAGCCGTTTACGTCCAACATGTACAGCCGCCGCGTCCTCGCG 4230 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG 55639 || || || ||| | |||||| || | | ||||| ||| Sbjct 4231 GGCGAATTCACCATCGTTAACAAGTACTTGATGAAGGAGCTG 4272 >seq177 Length=11201 Score = 150 bits (166), Expect = 2e-31 Identities = 307/451 (68%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || |||||||| || || ||||| |||| | ||| |||| ||| || || || || Sbjct 826 CCCGTGCCGATGCCGTCGGCGCCGTTCACCAACAACATGGGCAGAATCGGTACGAAATAC 885 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | ||||| || || ||||| || |||||| | ||| | | | ||| |||| Sbjct 886 ACGGGCTCTACGGGTACGCCGTCGTCGTGCACGTACTCCAAGAGCGTTTCGTCCGCCGCC 945 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAAC-GCGTGAAGATGTATCGGGAGCTGGCCGC 152054 || ||| | | || || | || | |||| ||||| || |||| || ||||| Sbjct 946 GGAAAGATCAGCCTCGTG-TACGGCTGGAGGTGCGTAAAGATATACCGGGCACTCGCCGC 1004 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||| || || |||||||| |||||||| ||||| || | || || | ||| Sbjct 1005 GTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGACCAGACGGAACCAGCAGTGGCACGTT 1064 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||||| ||| ||||| | ||| |||| || |||||||||| | || ||| || || Sbjct 1065 GTTGGAGCCGACGAAGTCCTGCGCCATGTTGACAATCGTGCTCAATAGCGACGCCTCGCC 1124 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||| || |||||||| || || ||| ||| || |||| || || || ||||| ||| | Sbjct 1125 GTGATGGTACGCCGTGTGTTCGGCGCAGTACCCGGCCAGTTGGGCGACTTTCATTTCCTT 1184 Query 152235 CGTCAGGTTCTTCTTGAGA-CAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 || || | | || | || || | | |||||||||||||| || || | |||| Sbjct 1185 GACCAAGTGCCG-TCGAAAGCATGCAAACAATACCTTGCGCTGGGACGGCTTGAGTCCGT 1243 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTC 152324 | | ||||| |||||||| || || |||| Sbjct 1244 CAATCACGTTCGGAATCGACCGGATGTTGTC 1274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 300/461 (65%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 |||| || ||||| || || || || |||| || | ||| |||| | || ||| | Sbjct 824 ACCCCGTGCCGATGCCGTCGGCGCCGTTCACCAACAACATGGGCAGAATCGGTACGAAAT 883 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTG-ACGTACTTGAGCACCGCATTGTCACTC 117268 || | ||||| || | | |||||||| ||| ||||||| | | || | ||| | Sbjct 884 ACACGGGCTCTACGGGTACGCCGTCGTC-GTGCACGTACTCCAAGAGCGTTTCGTCCGCC 942 Query 117269 GGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCA 117328 | || || | | || |||| ||| | || || || || || | || || Sbjct 943 GCCGGAAAGATCAGCCTCGTGTACGGCTGGAGGTGCGTAAAGATATACCGGGCACTCGCC 1002 Query 117329 GCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 || ||||| || || || ||||| || || || ||| ||| ||| || || | Sbjct 1003 GCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGACCAGACGGAACCAGCAGTGGCACG 1062 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCA 117448 ||||||| ||| || |||| || |||| |||||||||||| | || |||||| Sbjct 1063 TTGTTGGAGCCGACGAAGTCCTGCGCCATGTTGACAATCGTGCTCAATAGCGACGCCTCG 1122 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC- 117507 || || || |||||||| || || || ||| || ||||| || || || ||||| || Sbjct 1123 CCGTGATGGTACGCCGTGTGTTCGGCGCAGTACCCGGCCAGTTGGGCGACTTTCATTTCC 1182 Query 117508 -TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 |||| || || | | ||| ||| | | ||||||||||| ||||| || | Sbjct 1183 TTGAC--CAAGTGCCGTCGAAAGCATGCAAACAATACCTTGCGCTGGGACGGCTTGAGTC 1240 Query 117567 CATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCAGCG 117607 | || ||||| || ||||| || ||||| |||||| Sbjct 1241 CGTCAATCACGTTCGGAATCGACCG---GATGTTGTCAGCG 1278 Score = 82.4 bits (90), Expect = 8e-11 Identities = 166/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 118107 GTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTA 118166 ||| |||||| | |||| | || | | |||||| | |||| |||| || | Sbjct 2212 GTTTGAGCCCCAAGATCGTACAGAGATGGCTAAATTCAGCGTTTTTTGTCAGTTGCGTGT 2271 Query 118167 TGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCAC 118226 ||||||||| || |||||| | || ||||||| || ||||||||| | || | Sbjct 2272 CGGTGGCGTCGCGGACGTTGAGGAATTTTCCCCGCAACGGGAACACGCCATATGCATCCC 2331 Query 118227 GGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAA 118286 ||||||||||||||||| || | || || || || || || || || || || | || Sbjct 2332 TTCCCACAACGCTCAAGCCAGCGACCGCGAGCGCTTTGGCTGAATCGCCTTCAGTCAAAA 2391 Query 118287 TAAGAGTGCACTCG-GTGCTGCGATGA-GTACCGGCCCAATTAGCATCATCCAGCTTCGG 118344 | | ||||||| | ||||| | || || || ||||| || || || || ||||| || Sbjct 2392 TCAACGTGCACTTGTGTGCTTTG--GACGTGCCTGCCCAGTTGGCGTCCTCAAGCTTGGG 2449 Query 118345 AAC 118347 || Sbjct 2450 CAC 2452 >seq1997 Length=17169 Score = 149 bits (164), Expect = 7e-31 Identities = 564/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 74455 ACTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGT 74514 |||| || || || || || ||||| || ||||||||||| || |||| ||| ||||| Sbjct 5521 ACTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCA 5580 Query 74515 TCTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCT---CCCCAAACTGTG 74571 | ||||||||||| || |||||||| || || ||| || ||| | |||| | | Sbjct 5581 TGTCCATCCAGTCAAAGGGGTTCTTGGC--CGCAAAGAG-CTTGGGGGCGCCAAGCGATT 5637 Query 74572 CCATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGA 74631 | | ||||||||| || || | |||||| | ||| ||| | |||||| | Sbjct 5638 CGAGGAGGCGATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAA 5697 Query 74632 TGAGTTTGCACGGCAGTGC-CTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG- 74689 |||||| ||||| || |||| | | ||||| |||| | ||| || ||| | Sbjct 5698 TGAGTTC-CACGGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTC--AACGGCATCGC 5754 Query 74690 -GACAATCTTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCA 74748 |||||||| ||| ||| || | ||| | || | ||||| | ||| Sbjct 5755 CGACAATCTCGTGGATGCGCGTGTCCGACAGCTTGTTGACGAGCTTCGAGTACA---TCA 5811 Query 74749 CG---GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAA 74805 | ||||| || ||| |||||| || | || | ||| ||||| ||||| | Sbjct 5812 AGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACA 5871 Query 74806 GGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGA 74865 |||| ||||| || || |||||||| | ||||||||||| ||||| ||||| ||||| Sbjct 5872 GGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGA 5931 Query 74866 AGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA--CGGTGCATCGGAAGT 74923 |||||||||| || || || ||||| | ||| | ||| | ||| || | || Sbjct 5932 AGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGT 5991 Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCT 74981 | ||| | | ||||| | || || || ||| |||| || | || ||||| || Sbjct 5992 CGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGA-CGCACGGAATGGTTTCGATGGCG 6050 Query 74982 TGGAAGAGGCTTGCCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 | | | || ||||||| ||||| ||||||| | |||| || | || ||||| Sbjct 6051 CGCAGCACGCGGTCCTTCTCGGTCGGG-TCCTTGATGTATGTGTCGATGAGGAGCGAGTA 6109 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | ||||| || || ||| || ||| ||| || | || || | |||||||| | Sbjct 6110 CACTTCCGAGTGGATGTTTTCGATG-GCGATTTGGAACCCATAAAAGCATCGCGCCTCGG 6168 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 | || || || || ||| |||||| | | || || ||||||||||||| | Sbjct 6169 GGACTTGCACTTCATTGCTAAAGTTCATGGCCAGGTTTTCGTTGACGATGCCGTCGCTCG 6228 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCC 75219 | || || || ||||| || |||| ||| |||||| | ||| | | ||| || Sbjct 6229 CAGCAAAGAACGCCAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGACAACTTGATCC 6288 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCT 75279 | || | | || | |||| || | |||||| | |||||||| ||| | ||| || Sbjct 6289 AGTCGCGCTGATCGTGCACCAAGTCGAGTTCCTCGGCAGTCCAGAAGCTCGC-CTCGGCT 6347 Query 75280 TT-TTGTACAAAGACCACAAGTC 75301 || ||||||| ||||| ||| Sbjct 6348 TTCTTGTACATTTCCCACACGTC 6370 >seq124 Length=47272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 152047 CTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGG 152106 ||||| ||||||||||| || || ||||| |||||||| || ||| | || | | Sbjct 22014 CTGGCGGCATCCTTGCCCCCCATGAGTCGCGTCCCAAACTGGCCGTTGGGTGCCAGCAAG 21955 Query 152107 TTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTC 152166 |||| ||||||| || ||||| || || |||| | || ||||| || ||| || Sbjct 21954 TTGATGTTGTTGCTTCCAACGAAGTTTTGGGCCATGCCGATGATGGTGCCGTGGAGATTC 21895 Query 152167 GCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTC 152226 |||| ||||| || ||||| | ||||| | ||||| |||| || ||||| || || Sbjct 21894 ACTTCGCCGTGATGGTACGCTGAATGCTCTGAAATGTACCCCGACAGTTGCGCGACTTTG 21835 Query 152227 ATGTC 152231 || || Sbjct 21834 ATCTC 21830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547173447115800