Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3609 93.3 3e-14 seq916 89.7 3e-13 >seq3609 Length=34764 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||||||||||||| || || |||||| || ||||| ||||| Sbjct 21356 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21415 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||| || || ||||| || | || || || || || || Sbjct 21416 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 21475 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| ||||||||| || ||| | || | ||| | ||| || Sbjct 21476 ATTCCTTCCTTGTCCTGGATCTTTTG-CTTGACGTTGTCGATCGAGTCCGAGGGCTCGAC 21534 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| || || ||||| | || || || || || ||||| Sbjct 21535 GTCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21582 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| || || |||||| || ||||| || || || || || Sbjct 21593 AGGCGAAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGA 21652 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| || || ||||| || | |||||||||||||| || | || ||| Sbjct 21653 CCGTCTTCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCC 21712 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| || || ||| | || | ||| | ||| || || | ||| Sbjct 21713 TTGTCCTGGATCTTCTG-CTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGT 21771 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || ||||| | || || || || || ||||| Sbjct 21772 TATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 >seq916 Length=99455 Score = 89.7 bits (98), Expect = 3e-13 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAA 34573 |||||||| ||||| || || | || ||| || | ||||| | ||| || ||||||| Sbjct 60876 TCCTTTTGGATGTTGTAGTCGCTCAAGGTG--CGGCCATCTTCCAATTGCTTGCCGGCAA 60933 Query 34574 ATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG 34633 | || || ||||| ||||| ||||| | || ||||||||| ||||||||| || | || Sbjct 60934 AGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGA-CG 60992 Query 34634 ATAA-AATTGTGTCTT-CGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691 | ||| | ||| || | ||||| |||| || || || || || || || || || Sbjct 60993 TTGTCAATCGAGTCGGACGGT-TCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTT 61051 Query 34692 CACAAAAATCTGCATGTT 34709 || ||||||||||| || Sbjct 61052 GACGAAAATCTGCATATT 61069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314705737693493