Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq916 167 2e-36 seq5958 145 7e-30 seq3609 140 3e-28 seq2657 114 1e-20 >seq916 Length=99455 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | || || | || |||||||||||| Sbjct 61066 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCGTCC 61007 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | ||||| ||||| || |||||||| |||||||| || || || || Sbjct 61006 GACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 60947 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||||| ||||||||||| | ||| | ||| |||||| Sbjct 60946 CAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTACAAC 60887 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| ||||| || || ||||| | || |||| ||||| Sbjct 60886 ATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGG 60840 >seq5958 Length=27980 Score = 145 bits (160), Expect = 7e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || |||| || ||| | || || || || |||||||| | Sbjct 18496 CCATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTT 18555 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||||||||||| | || || ||||| ||||||||||| |||||||| || || || | Sbjct 18556 CCGACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACC 18615 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||||| || | || ||||| || ||||||||| | || | ||| |||| Sbjct 18616 AGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACA 18675 Query 27166 ACATTCAAAAGGAGTCGACC 27185 |||| ||||||||||| ||| Sbjct 18676 ACATCCAAAAGGAGTCCACC 18695 >seq3609 Length=34764 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||||||| | || || || || || || || || Sbjct 21582 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21523 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| ||||| || || ||||| ||||| || || || ||||| Sbjct 21522 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAG 21463 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || || || ||| |||||||| || ||| | |||||||||| Sbjct 21462 CAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAAC 21403 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || || |||||||||||| | |||||||| ||||| Sbjct 21402 ATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCG 21368 >seq2657 Length=89683 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || |||| || || | || || | || |||||||| | Sbjct 86349 CCATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCAT 86290 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||||||||| || | || || ||||| || || ||||| ||||| || || || || | Sbjct 86289 CCGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACC 86230 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTAC 27164 | || || | || | |||||||| |||||||||||| | || |||| || ||| Sbjct 86229 AGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGAC-GGCCGCACGTTGAGTGACTAC 86171 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||||| || || | || | || |||| ||||| Sbjct 86170 AACATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGG 86121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434884579657920