Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq916 98.7 7e-16 seq3609 96.9 2e-15 seq2657 87.8 1e-12 >seq916 Length=99455 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| || || ||| | |||||||| || || | || || ||| Sbjct 61069 AATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCG 61010 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| ||| |||| ||||| ||||| || ||||| ||||| | ||| | Sbjct 61009 TCCGACTCGATTGACAAC--GTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTG 60952 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || || |||||||| || |||||||| || | |||| |||| ||| | Sbjct 60951 ACCAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACT 60892 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || || ||||| ||||| | || |||| || || Sbjct 60891 ACAACATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGG 60840 >seq3609 Length=34764 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || || || || || || || | || ||||| | | Sbjct 21582 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21523 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| ||||| || ||||| ||||| | || || | Sbjct 21522 GACTCGATCGACAAC--GTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATC 21465 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| ||||| ||| |||| |||| |||| | || |||||||| Sbjct 21464 AGCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACA 21405 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || |||||||||| ||||| | |||||||| Sbjct 21404 ACATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCGCCTCCGTGGCGG 21356 >seq2657 Length=89683 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || | || |||||| || || | ||||| ||| || Sbjct 86347 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 86288 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| || || ||||| || ||||| ||||| |||| ||| | Sbjct 86287 GACTCGATCGACAAC--GTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACC 86230 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || |||||||| || |||||||| |||| |||| ||| || |||| Sbjct 86229 AGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACA 86170 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || ||||| | || | || ||||||| || Sbjct 86169 ACATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGG 86121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355835419068867