Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5958 91.5 1e-13 seq3609 89.7 4e-13 >seq5958 Length=27980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || || ||| || || || |||| || | ||| Sbjct 18700 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 18641 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || | |||||||||||| | ||| | || || ||||| || || Sbjct 18640 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 18581 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | ||| | | | || ||| | |||||||| | |||||| | |||||||| Sbjct 18580 TGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGT 18522 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || || ||||||||||| Sbjct 18521 CAACGTCTTCACGAAGATTTGCAT 18498 >seq3609 Length=34764 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||||||| || || ||| || || || || || ||| || || || | Sbjct 21595 GCGAAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACC 21654 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || || || || |||||||| ||||| ||||| ||||| | ||| | || || || Sbjct 21655 GTCTTCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTT 21714 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||||| |||| ||| | | | || || | ||| ||||| | || | Sbjct 21715 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTA 21773 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCttt 39288 | | || || || || || || || |||||||||||| || Sbjct 21774 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATCCTT 21814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429513032523773