Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1981 219 1e-51 seq5958 152 1e-31 seq2657 152 1e-31 seq916 149 1e-30 seq3609 123 6e-23 seq3548 123 6e-23 seq1533 100 7e-16 >seq1981 Length=16353 Score = 219 bits (242), Expect = 1e-51 Identities = 223/291 (77%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| || |||| ||||||||| | ||||||| | || ||| | | Sbjct 8928 ACTTTATATTTAATTTTCGGTGCTTTTTCTGGTGTAGTAGGTACAACTTTATCTGTATTA 8987 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || | | ||||||||| || ||| ||||||||| | || ||| ||| | || Sbjct 8988 ATCCGTATGGAATTAGCTCAACCAGGTAATCAAATATTAATGGGAAATCATCAATTATAT 9047 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 ||||||||| | || || ||||| ||| |||||||||| ||| | |||||||| ||| | Sbjct 9048 AACGTTATTGTAACTGCACATGCTTTTATTATGATTTTTTTTATGGTTATGCCTGTTTTA 9107 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || ||||| || ||||||||||| | ||||||||||||||||||||| Sbjct 9108 ATTGGTGGTTTTGGTAATTGGTTTATTCCTTTAATGTTAGGTGCTCCTGATATGGCTTTT 9167 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || || | || |||||||||||||| ||| |||| ||||| |||||| || Sbjct 9168 CCTAGAATGAATAATATAAGTTTTTGGTTATTACCTCCTTCTTTATTTTTA 9218 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || ||||||||||| | ||||||||| || |||||||||| |||| || || ||||| Sbjct 9433 AAAGGTAATTTATGAAAAGATAAACCTGGAGATCTCATATTATATATAGTTGTTATAAAA 9374 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 |||||||| |||| | || || ||||| || | |||||||||||| || |||||||| Sbjct 9373 TTTATAGCACCTAATAATGATGAAATACCAGCTAAATGTAAACTAAAAATAGCTAAATCT 9314 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 || ||| || || |||||| |||| ||| || || |||||||| || || || Sbjct 9313 ACTGAAGGACCTGAATGAGCTTGAATACTTGATAAAGGAGGATAAACTGTCCAACCAGT 9255 Score = 118 bits (130), Expect = 3e-21 Identities = 90/104 (87%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| ||| | || ||||| Sbjct 14037 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTTTTTTAAAGGCAG 14095 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||| ||||||| |||||||||||||||||||||| || ||| Sbjct 14096 CAGTGAGGAATATTGGACAATGGGCGAAAGCTTGATCCAGCAAT 14139 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| |||||||| || |||||||||||||| | | |||||| ||||| ||||| Sbjct 9611 TTCAGGATGTCCAAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCTGA 9552 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||||||||| |||||| |||||||||||||| || |||| Sbjct 9551 TGGATCAAAAAAAGAAGTATTTAAATTTCTATCAGTCAATAACA 9508 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||| | |||| ||||||||||| |||||||||||||||| ||||| | | Sbjct 11684 AGGTGGCACAGAATTGGGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATCG 11625 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | || |||||||||||||||| Sbjct 11624 TAAGATGACGTATAGGGTCTGACAC 11600 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 ||| |||||||| || | |||| | || ||||||||||||| ||||||||||| | | Sbjct 14712 AGGATTGGTAAGGTTTTGCGCGTATTGTCGAATTAAACCACATGCTCCACCGCTTGTGTA 14653 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| ||||||||| | || | ||||| ||| | || Sbjct 14652 GACTCCCGTCAATTCCTTTGAATTTCAACCTTGCGATTATACTCTTCAGGCGGAGTGCTT 14593 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 14592 AACGCGTTAGCT 14581 >seq5958 Length=27980 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225507 AAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAG 225566 || |||||| ||||| || ||||||| ||||| ||| | || | || ||||| | Sbjct 18704 AATGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAA 18645 Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 |||||| ||||| ||||| | || || ||||| || ||||| |||||||||||||| || Sbjct 18644 CTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAAT 18585 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 |||||||||||| || || | ||| || | ||||||||| | |||||| ||||| || Sbjct 18584 CTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCC 18525 Query 225687 CGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || | ||| | |||||| Sbjct 18524 CGTCAACGTCTTCACGAAGATTTGCAT 18498 >seq2657 Length=89683 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| | || ||||| ||||||| ||||| || ||| || | || ||| Sbjct 86136 AGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCT 86195 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 86196 TCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCC 86255 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||||||||||| ||||| | ||| || | |||||| || |||||||| || Sbjct 86256 TGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTT 86315 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||| | |||||| Sbjct 86316 TTCCCCGTCAACGTCTTGACGAAGATTTGCAT 86347 >seq916 Length=99455 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| ||||| ||| ||| || | |||||||| | ||||| || Sbjct 60870 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 60929 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || || ||||| ||||| || |||||||||||||||||||||||||| Sbjct 60930 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 60989 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || | ||| || | ||||||||| |||||||| ||||| || |||||||| Sbjct 60990 ACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTC 61049 Query 225697 TTTATGAACACTTGCATTTT 225716 || | ||| | ||||| || Sbjct 61050 TTGACGAAAATCTGCATATT 61069 >seq3609 Length=34764 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || || |||| ||||| ||| || || | || ||||| || ||| Sbjct 21608 TGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGTTGC 21667 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 ||||| || |||||||| || |||||||| || || || ||||||||||| |||||||| Sbjct 21668 TTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTC 21727 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| || ||||| | ||| |||| || ||||| | || || |||||||| || Sbjct 21728 TGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTG 21787 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 21788 AGGGTCTTGACGAAGATTTGCAT 21810 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || || |||| ||||||||| || || | || ||||| || ||| Sbjct 21380 TGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGC 21439 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| || || || || || ||||||||||| ||||||||| Sbjct 21440 TTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTT 21499 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| || ||||| | ||| |||| || ||||| | || || |||||||| || Sbjct 21500 TGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTG 21559 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 21560 AGGGTCTTGACGAAGATTTGCAT 21582 >seq3548 Length=3510 Score = 123 bits (136), Expect = 6e-23 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||||||||||||||| |||||||| ||||| |||||||| || |||||||| Sbjct 3001 AAAATTTGACCATCAGTAATAGAAATAACATTGGTAGGAATATAAGCTGATACATCACCA 2942 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| ||||| | ||||||||| ||||||| || || ||||||| Sbjct 2941 GCTTGAGTTTCAATAACAGGTAAAGCTGTTAAAGAACCCCCACCAA 2896 >seq1533 Length=44702 Score = 100 bits (110), Expect = 7e-16 Identities = 98/126 (78%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATA----TTAAATATCGTAGTAAT 371420 || ||||||||||| | |||||||||||| ||||||| ||| |||| || || || Sbjct 27694 AAAGGTAATTTATGAAAAGATAAACCAGGAGATCTCATACATATTATATATAGTTGTTAT 27753 Query 371421 AAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAA 371480 || |||||||| |||| | || || |||||||| | |||||||||||| || ||||| Sbjct 27754 GAAATTTATAGCACCTAATAATGATGAAATACCTGCTAAATGTAAACTAAAAATAGCTAA 27813 Query 371481 ATCGAC 371486 ||| || Sbjct 27814 ATCTAC 27819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192436147437374