Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3609 107 4e-18 seq916 91.5 3e-13 seq5958 87.8 4e-12 >seq3609 Length=34764 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || |||||||| || ||||||||||| ||| | || | || ||| Sbjct 21599 AGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCT 21658 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || |||||||| | ||| ||||||| | ||| |||||||| || Sbjct 21659 TCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCC 21718 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||||| | || | ||| || ||| || || || || || || Sbjct 21719 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTC 21778 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| ||||| Sbjct 21779 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 Score = 100 bits (110), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| || || ||||| || ||||||||||||||| | || | || ||||| || | Sbjct 21379 ATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTG 21438 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || || ||||| || | ||||| || | | |||||||||||| || || || Sbjct 21439 CTTT--CCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATC 21496 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||||| ||||| | || | ||| || ||| || || || || || || ||||| Sbjct 21497 TTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCG 21556 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||| ||||| Sbjct 21557 GTGAGGGTCTTGACGAAGATTTGCAT 21582 >seq916 Length=99455 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || |||||||||||||| ||| || || | |||||||| | || ||| Sbjct 60870 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 60929 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | ||||||||| | || ||| |||||||| ||||| || ||||| ||| Sbjct 60930 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 60989 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| || || || || | || || || || || || | |||| Sbjct 60990 ACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTC 61049 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | |||||| || Sbjct 61050 TTGACGAAAATCTGCATATT 61069 >seq5958 Length=27980 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || ||||| |||||||||||||| ||| | || | || ||||| | Sbjct 18700 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 18641 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | ||||||||| | | || |||||||| |||||||| ||| Sbjct 18640 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 18581 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || || | || | ||| ||| || || || || || || || || ||||| Sbjct 18580 TGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTC 18521 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||||| ||||| Sbjct 18520 AACGTCTTCACGAAGATTTGCAT 18498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153728832910291