Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2657 123 2e-23 seq916 120 3e-22 seq3609 116 3e-21 >seq2657 Length=89683 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || |||| ||| ||||| || ||||| ||||| Sbjct 86118 CCCCCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCA 86177 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | ||||| |||| || | ||||||||||| || || ||||| || ||||||| | Sbjct 86178 CTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGG 86237 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 |||| | ||||||||| ||| ||||||||| ||| | | | | |||| | || Sbjct 86238 GGAATCCCTTCCTTGTCCTGGATCTTTTGCTTC-ACGTTGTCGATCGAGTCGGATGGTTC 86296 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| |||| ||| || ||||| ||||||| |||||| ||||| || |||||| Sbjct 86297 CACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCATG 86348 >seq916 Length=99455 Score = 120 bits (132), Expect = 3e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || ||||| || || | ||||| |||| ||| ||||| || ||||| ||||| Sbjct 60836 ACCACCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTC 60895 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | | |||||| | || || | ||||||||||| || |||| |||||| ||||| | Sbjct 60896 GCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGG 60955 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 || | || |||||||| ||| |||||||| ||| | | | | |||| || | Sbjct 60956 CGGGATGCCTTCCTTGTCTTGGATCTTTTGCTT-GACGTTGTCAATCGAGTCGGACGGTT 61014 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| |||| ||| || || || || |||| ||||| |||||||||||||| || Sbjct 61015 CCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATT 61069 >seq3609 Length=34764 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||||| || ||||||||| ||||| |||||| Sbjct 21584 CCACCACGCAGGCGAAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 21643 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || ||||| || || || || |||||||||||||||| ||| Sbjct 21644 AGGGTACGACCGTCTTCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGG 21703 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||||| ||| | | | | ||| | ||| || Sbjct 21704 ATGCCTTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGAGGGCTCGAC 21762 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 21763 GTCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462268050085200