Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq18 152 5e-32 >seq18 Length=1130244 Score = 152 bits (168), Expect = 5e-32 Identities = 313/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||||| || || || ||||| || | || ||||| | || |||||||| || | Sbjct 427063 ACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGA 427122 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | ||| || ||||| ||||| ||||| | ||| || || | | ||||||||| | Sbjct 427123 AGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCG 427182 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || ||||| | ||||| || | | ||||| ||||| | || | Sbjct 427183 AGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGCT 427242 Query 17136 TGTTA-CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || || | ||| ||| |||| |||||| | | || ||||| || Sbjct 427243 TATTGTCGCA-CCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCA 427301 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAG 17253 ||||| | | || |||||| || | || | || ||||| |||||||| || Sbjct 427302 ATGGCACGCAGGACCCGGTCCTTTTCC-GTGGCATCCTTGATGTACGTGTCGATGAGGAG 427360 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 ||||| ||| ||||| |||||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 427361 CGAGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGC 427420 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGCCG 17371 ||| | | ||| ||||| | || |||| ||| || |||||||||||||| ||| Sbjct 427421 TTCAGGCACTTGTACTTCATTGCTAAA--GTTCATCGCGAGGTTTTCGTTCACGATCCCG 427478 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 || |||||||| || ||||||| | |||| | ||||| Sbjct 427479 TCACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAA 427516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542488257080