Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq26 114 2e-20 >seq26 Length=915853 Score = 114 bits (126), Expect = 2e-20 Identities = 403/632 (64%), Gaps = 62/632 (10%) Strand=Plus/Plus Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595 |||||| | ||| ||||| ||| | | |||||||| ||| || || |||| |||||| Sbjct 835317 TTAGACGGACATATCCATCTTGATAGTCTTGTGGGGGTCGTATCCGTCGAGCGTAAAGTC 835376 Query 145596 CTCCGCCCTGAAGTCATCTATGTC---CTCCACCCGCCTCAGGATCCTGAGCCTGGGAAA 145652 || | |||| || || ||| || | | ||| || |||||||||||| Sbjct 835377 GTCAAACGTGAATTCGTCGATGGATGTCTTGGCAGGGTTCAA-ATG--GAGCCTGGGAAA 835433 Query 145653 GGGCCGGGG-GCTC-CTGGTCAGCTGGAGCTTCAGG---GGCTCCACGTGGTTGAGGTAG 145707 || || || | || || ||||||| || ||| ||| | |||||||| ||| Sbjct 835434 CGGACGCGGCGATCGCT--TCAGCTG---CTCGAGGAGAGGCGCGACGTGGTTCGAGTAC 835488 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 || || || || || | ||| ||||| ||||| |||| | |||||| | | ||||| Sbjct 835489 ACATGGGCATCGCCAATGACATGGATAAAGTCGCCGGCTTGGAGGCCGCTCACTTGGGCT 835548 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 | |||| ||||| || | |||||| || |||||||| || || || || ||||||||| Sbjct 835549 AGCATGCGCGTCAGGAGCGCGTAGCTCGCAATGTTGAATGGGACGCCGAGTCCCATGTCC 835608 Query 145828 CCCGAGCGCTGGTA--------------------------------------------CA 145843 | ||||||||| || Sbjct 835609 GCGCTGCGCTGGTACATCTGCGCGAGTAGTCAGATACAGTCGCAACATGGATGGTTGGCA 835668 Query 145844 GCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCA 145903 |||||| || ||||| ||| | || ||||| |||||||| || | |||||| ||||||| Sbjct 835669 CCTGGCACGACAGCTCGCCGTCGGCGACGTAAAACTGGCAGAGCATGTGGCACGGCGGCA 835728 Query 145904 GGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGA-GCCTCCTGCTCTCG 145962 | |||||| | || ||| || || ||||| || | | || || || | | ||| Sbjct 835729 GCGCCATGATGCCCAAGTCAGCGGGATTCCACGCCGACAAGATGATGCGGCGATCGTTCG 835788 Query 145963 GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAA 146022 | | | |||||||| || | |||| ||||||||| ||| || ||| |||| Sbjct 835789 GCG-TGTGCTTGATCTTGTAAATGACGTCCGCGAGCTGGTCATGGCCTTGTCCCGTGTAA 835847 Query 146023 TCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGC 146082 || || | || ||||||| || || || || | |||||| || || ||||| || Sbjct 835848 TCCGTGTGCATATCGACGTACGTCGCGCCAAAATGTCGCCACTGAAAGCCATAGACCGGG 835907 Query 146083 CCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCC 146114 |||| || || ||| | ||| | ||||| Sbjct 835908 CCCAAATCGCCTTCCTCGCGGTGGACGAGCCC 835939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590073252163240