Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 seq27 113 4e-20 seq76 95.1 1e-14 >seq11 Length=1510989 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| ||||| | ||| |||| ||||| || || |||||||| ||||| ||||| | Sbjct 1070369 CCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 1070310 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || || ||||| ||||||||| | || | | ||||||||| || Sbjct 1070309 AACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 1070250 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||||||||| || | | ||| | || |||||| Sbjct 1070249 ATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 1070190 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| || |||||||| || || || || ||||| || || ||||| || Sbjct 1070189 TCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATT 1070140 >seq27 Length=843962 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||||| || || |||||||| ||||| ||||| | Sbjct 479981 CCACCACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTC 479922 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || |||| || ||||| ||| | || || | ||||| || ||| Sbjct 479921 AACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGG 479862 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||||| ||||| | | ||| | || || ||| Sbjct 479861 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACA 479802 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || || ||||| ||||| || |||||||| Sbjct 479801 TCCAACGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq76 Length=128956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||| || |||||||| || || || ||||| || || || | ||| Sbjct 44890 AGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCC 44949 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| ||||| ||| | || |||| ||||| ||| || | ||||||||||| Sbjct 44950 TCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCC 45009 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || || | | | | | || |||||| || | ||||||||| Sbjct 45010 TGAATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTC 45069 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || |||||||| || ||||| Sbjct 45070 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256724637396