Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18 251 7e-62 seq76 123 3e-23 seq27 123 3e-23 seq11 100 3e-16 >seq18 Length=1130244 Score = 251 bits (278), Expect = 7e-62 Identities = 489/706 (69%), Gaps = 22/706 (3%) Strand=Plus/Minus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 |||||||| | ||||| || ||| || | ||| ||||| |||||||||||||| || | Sbjct 427656 GGTTCGTGCTCTTCCCGATCCAACACGCCGACGTGTGGGAGATGTACAAAAAGGCGGAAG 427597 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAGCGACTGGGAGC-G 116721 || |||||||| | || ||| | ||| || | || | || ||||||||| | Sbjct 427596 CGAGCTTCTGGACAGCGGAAGAGCTAGACTTGGTGCACGATCAAC-GCGACTGGGTCAAG 427538 Query 116722 CTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGA 116781 ||| | ||||||||| || ||||||| ||| |||||||| || || ||||| || || Sbjct 427537 CTT-ACCGACAACGAACGTTTCTTCATCACGCATGTGCTGGCGTTCTTTGCCGCGAGTGA 427479 Query 116782 CGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 ||| ||||| ||||| || || | || | ||| || | || || || ||| | || Sbjct 427478 CGGGATCGTGAACGAAAACCTCGCGATGAAC-TTTAGCA-ATGAAGTACAAGTGCCTGAA 427421 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCG 116899 || |||||||||||||| || ||||| ||||| |||||| | ||||| ||| |||| ||| Sbjct 427420 GCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAACATTCACTCTGAAGTGTACTCG 427361 Query 116900 ACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATC 116959 |||||||||||||||| | | | ||| ||| ||| | || ||||| Sbjct 427360 CTCCTCATCGACACGTACATCAAGGATGCCACGGAAAAGGACCGGGTCCTGCGTGCCATT 427301 Query 116960 GAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGA 117019 || ||||| || || ||| | || ||| ||||| || ||| || | | | Sbjct 427300 GACACGATCCCCTGTGTCCGACGCAAAGCCACCTGGGCTTTGAAGTGGTGCGACAATA-A 427242 Query 117020 GAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC 117078 | | || |||| || || || | || ||||| || || ||||| ||| ||||||| || Sbjct 427241 GCGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCGCTGTCGAAGGCATCTTCTTCTC 427182 Query 117079 GGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTT 117138 ||| ||| | |||| || ||||||||||| || || || ||||| || || | || Sbjct 427181 GGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGTCTAATGCCGGGTTTGTCCTT 427122 Query 117139 CAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 | ||||| ||||| || | ||||| |||||||| ||||||||||| || ||| ||| Sbjct 427121 CTCGAACGAACTCATTTCTCGCGACGAAGGTCTGCACTGCGACTTTGCGTGCTTGATGTA 427062 Query 117199 CAAGCATTTGGTGCAGC-----GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGAC 117253 | | | | || || | | |||| | |||| || ||||||||| |||| Sbjct 427061 CTCGAAGCTCGT-CAACAAGTTGTCCGACC----AGCGCATCCACGAGATCGTCGGCGAC 427007 Query 117254 GCGGTCGCCATCGAGCAGCGCTTCCTCACCGA-AGCGCTGCCGGTG 117298 || ||||| || ||| ||| || ||| || ||| ||||| ||| Sbjct 427006 GCCGTCGCGATTGAGAAGCAGTTTGTCAGTGAGAGC-CTGCCCGTG 426962 >seq76 Length=128956 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||| || ||||||| || | || Sbjct 45101 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTCC 45042 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | ||||| | || |||| ||||| || || || || |||| || Sbjct 45041 GACTCGATTGACAATG-TCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 44983 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||||||||| || ||||| ||| |||| || | ||||| | | ||||||||| Sbjct 44982 GCAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTACAA 44923 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || |||||| Sbjct 44922 TATCCAGAAGGAGTCGACCCTGCAT 44898 >seq27 Length=843962 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | ||||| ||||||||||| | || || ||| | || Sbjct 479755 ATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATCC 479814 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| |||| || | ||||| || ||||||||| | || || Sbjct 479815 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCA 479873 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || ||||| || |||| || | ||||| | | ||||||||| Sbjct 479874 GCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTACAA 479933 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||| ||||| | || |||| | ||| | ||| || | || || ||| Sbjct 479934 CATCCAAAAGGAATCGACCTTGCACTTGGTGCTCCGCCTGCGTGGTGGTGGC 479985 >seq11 Length=1510989 Score = 100 bits (110), Expect = 3e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || | || || || |||||||| | ||||| || Sbjct 1070138 GAAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGC 1070197 Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | | ||| | | |||| |||| |||| || | ||||| || |||||||| | Sbjct 1070198 CTTCGGACTCGATCGACAACG-TCAAACAAAAGATCCAAGACAAGGAAGGCATCCCGCCT 1070256 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || | |||| |||||||| ||||| || || | ||||| | | |||| Sbjct 1070257 GACCAGCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAGCGAC 1070316 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| ||||| | ||| |||| Sbjct 1070317 TACAACATCCAAAAGGAATCGACGTTGCA 1070345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216102244560