Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq27 113 5e-20 seq11 95.1 1e-14 seq25 87.8 2e-12 seq62 86.0 7e-12 seq1 86.0 7e-12 seq18 82.4 9e-11 seq14 82.4 9e-11 >seq27 Length=843962 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 479964 CACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTC 479905 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||||| || || || ||||| || ||||| || | || | || ||||||||| Sbjct 479904 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 479845 Query 43094 GATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| ||||| || | ||| | | | || |||| | ||||||||| | ||||||||||| Sbjct 479844 GATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTT 479786 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| | |||||| || ||||||||||| Sbjct 479785 TACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq11 Length=1510989 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 1070351 ACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCG 1070292 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || | ||||||||||| | ||| | || |||||||| | Sbjct 1070291 AGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 1070232 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || |||||||||| ||| | | | || ||| | ||||| || | ||||||||| || Sbjct 1070231 ATCTTTTGTTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 1070173 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || || | ||||| || || || ||||| ||| Sbjct 1070172 CCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 1070139 >seq25 Length=1058404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | ||||| || | |||||| |||||| |||| |||||||||||||| | ||||| Sbjct 820760 AAAAATGTCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACT 820701 Query 60118 CACCACTATACTACCGAGGAT 60138 |||||||||||| ||||||| Sbjct 820700 GACCACTATACTAACGAGGAT 820680 >seq62 Length=376909 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||| | ||||||||||||| Sbjct 225168 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACTCACCACTA 225227 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 225228 TACTAACGAGGA 225239 >seq1 Length=2817317 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| |||| |||||||||||||| | ||||| |||||| Sbjct 2773698 TCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACTGACCACT 2773757 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 2773758 ATACTAACGAGGATT 2773772 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||| | ||||| ||||||| Sbjct 2787562 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACTGACCACTA 2787503 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 2787502 TACTAACGAGGAT 2787490 >seq18 Length=1130244 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| |||| |||||||||||||| | ||||| |||||| Sbjct 169540 TCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACTGACCACT 169599 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 169600 ATACTAACGAGGA 169612 >seq14 Length=1185136 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||| | ||||| ||||||| Sbjct 279245 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACTGACCACTA 279186 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 279185 TACTAACGAGGAT 279173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814161946680