Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq27 125 5e-24 seq76 123 2e-23 seq11 107 1e-18 >seq27 Length=843962 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| || || ||| || || |||||||||||| | Sbjct 479981 CCACCACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTC 479922 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || ||||| |||||||| || || ||||| || ||||| || ||| Sbjct 479921 AACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGG 479862 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||||||||| | | | | ||||| |||| | ||| || Sbjct 479861 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACA 479802 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||| || || | || || || ||||| ||||| Sbjct 479801 TCCAACGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq76 Length=128956 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||||||| || | ||| | || |||||||||||||| || || Sbjct 44911 TCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAG 44970 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| || ||||| || || | | |||||||| ||||| ||||| | || | Sbjct 44971 ATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATTG 45030 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | ||||| |||| || || ||||| | ||| ||||| ||||||||||| || || ||| Sbjct 45031 TCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACA 45090 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 45091 AAGATCTGCAT 45101 Score = 84.2 bits (92), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 |||||||| ||||| ||||| | || | | ||||| |||| || || ||||| | | Sbjct 87491 TCCTTGTCCTGAATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGC 87550 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||||||||| || || |||||||||||||| Sbjct 87551 GTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 87591 >seq11 Length=1510989 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| || || ||| || || |||||||||||| | Sbjct 1070369 CCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 1070310 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | | ||| | || || | ||||||||| || || || | ||||||||||| | |||| Sbjct 1070309 AACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 1070250 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| |||||||| || | | | | ||||| || | | || || Sbjct 1070249 -ATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 1070191 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||||||| || || || | ||| || || || |||||||| Sbjct 1070190 GTCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070106091360