Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq18 95.1 3e-14 seq66 84.2 5e-11 >seq18 Length=1130244 Score = 95.1 bits (104), Expect = 3e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 157253 TTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATG 157312 |||||||||||| | || | ||||| |||||||||||||| |||||||| || |||||| Sbjct 426780 TTGCTGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATG 426839 Query 157313 TCCATCCACTCGAATGGGTT 157332 |||||||| ||||| ||||| Sbjct 426840 TCCATCCAGTCGAACGGGTT 426859 >seq66 Length=146049 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || ||||| | || |||||||| |||||||| ||||| ||||||||||| | | | Sbjct 132519 ATTGCACACCGACTTTGAATCGGCTCGATGATCTTGGTCGAGTTGTTGCATGCGAGAGCG 132460 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 ||||| |||||||| | || ||||| | || || |||||||| || | | | Sbjct 132459 AACCGTGTCGTGCTGCTAAAGACTTCCATCGTTCGACGGAGCGCCTGCTGTGCCGCGGTT 132400 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTTT 115557 ||||| |||||||| ||||| | | || |||||| Sbjct 132399 GTCATTGAGTCTGCTTCGTCCAAGATCACGATCTTT 132364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073759782579008