Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq18 131 1e-25 seq11 122 8e-23 seq27 116 3e-21 seq76 107 2e-18 >seq1 Length=2817317 Score = 233 bits (258), Expect = 2e-56 Identities = 1163/1842 (63%), Gaps = 116/1842 (6%) Strand=Plus/Plus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 |||||| || ||||| || || | || ||| | ||| || ||||||||||| || Sbjct 1823955 GTCCACCGTGAACTGGATCGCATCGGCTTTCGGGCGTGAGCGGAGGTAATACATGCCGGT 1824014 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||| || || ||||||||||||||| || |||||||| | || | || || Sbjct 1824015 CTTGAGCCCACGCTTCCACGCGTAAAAGTGCATCGACGTGAGCTTGCTGATGCTTGGGTC 1824074 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 | |||| ||| || | || || || || ||| || || ||||| ||||| |||| Sbjct 1824075 TGCGATGTGCACGTTCATGGATTGGCTTTGGCAGATGAATGCGCCTCGGTCGGCAGCCAG 1824134 Query 22288 ATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTA 22346 | | || | | | | |||||||| || |||||||||| || | | | | Sbjct 1824135 GTCGAGCAC-GACCTTTTGCTTGATTTCCCACACAGTCTTGTACACTTCCTTCACATGCG 1824193 Query 22347 ACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCG 22406 || ||||| ||| |||| || ||| | ||| | |||| || | || Sbjct 1824194 CAGGGATCGACGCGACGTTCTGCACACTGCCGCGGTCGTGCAAGATCTGGTTGCGGA-CG 1824252 Query 22407 TAT-CGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CTTG 22464 | ||||||||| |||| | | | || || | || | |||||| | | || Sbjct 1824253 TCCGCGTTCCACAGGCCGAGCGAAATGAGCTCCTTCATCAAGTACTTGTTCACAATCGTG 1824312 Query 22465 AAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 || || || | |||||| ||||| ||| |||||| ||||| || |||| || || Sbjct 1824313 AAT-TCACCTGCCAAGACACGGCGGCTGTACATGTTGCTCGTGAAGGGCTCGATGGACTC 1824371 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||||| || || ||||| |||||||| ||||| |||||||| |||||||| | ||| || Sbjct 1824372 GTTGTTGCCAAGGATCTGGGCGGTCGACGCGGTAGGCATCGGGGCCAACAGCAACGAATT 1824431 Query 22585 TCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGG 22644 || | |||||||| | | || | || | | | | ||| |||||||| ||||| Sbjct 1824432 CCTGATGCCGTGCTGAGCGACTTGAGCTTTCAACGTGGCCCAATCCCACAGCGGCGACGG 1824491 Query 22645 CGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC---CGGGC-TGCCTT 22700 || ||||| |||||||||||| || |||| || || || ||||| || | Sbjct 1824492 GGTAACATT---CCACATATCGTACTGGAACA----GCCCCTTGCTTACGGGCGACCCGT 1824544 Query 22701 CGTACGTTTCGTACGGACCATATATCGC---GGCAAGTTCGCAGCTCGCCTCCAACGCGC 22757 |||||||||||| || || | ||| || ||||| | | |||| ||| Sbjct 1824545 GGTACGTTTCGTAAGGCCC---TTGCGCTTTTGCGAGTTCCATGGAAGTTTCCATGGCGG 1824601 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAA----TTCGGCGGCGGCGACGCTTTCG 22813 ||| || || ||||| ||||| | | |||||| || | | |||||| ||| Sbjct 1824602 CGTGGTAGATCGTCTCAAAGATCTGTTGGTTCAACAGCTTGGCTTGGGGCGAC----TCG 1824657 Query 22814 TACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873 ||| | | ||| | | ||||| ||||||| || || || || || |||||||| Sbjct 1824658 AACGCGAATCCCATGAGGATAAACGCATCCGCCAGCCCTTGGACACCAATGCCGATCGGG 1824717 Query 22874 CGG-------TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATC 22926 ||| | || | | | || | ||| | ||| | || || | || || Sbjct 1824718 CGGTGCCGCATGTTGCTGTTGCG-CGCTT---CTTCG---ATGGGGTAGTAGTTGACGTC 1824770 Query 22927 GATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTC 22986 ||| |||||||||| | || || | || | || | ||||| Sbjct 1824771 GATGACCTTGTTCAAGTTGGTCGTGACCACCTTGGCGATCTTGTGCAAGTGTTGGAAGTC 1824830 Query 22987 GTAAACGCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046 | | ||||| || | ||||||||||| || ||||| || || | ||||| ||||| Sbjct 1824831 GAACACGCC--GTTCT-CAACAAACTTGGAGAGCGCGATGGATGCCAAGTTGCACACGGC 1824887 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 || ||||||||| ||||||||| | |||||| || | ||||| | || ||||| Sbjct 1824888 GACTTCGTCTTTGCTCGTGTACTCGATGATTTCGCAGCACAAGTTGCTCGATTTGATCGT 1824947 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||| | || |||||| || | ||||||| ||||||||| | ||||||||| || Sbjct 1824948 GCCGAGGTTCTGTTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAACATGTACGGGGT 1825007 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGTC 23225 ||| || || || ||||| || | ||| || ||||| ||| | | ||| | Sbjct 1825008 GCCTGTTTCTACTTGCGATTCCAAGATGGCAAACCACAGTTGCTGCGCCTTGATGGTTTT 1825067 Query 23226 GCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285 | | | | ||||| | |||||| || | | | ||||| || |||| || | | Sbjct 1825068 TCGAGCA-CGCCCTTCCTTCTCGTATTTCGTGAAGAGAGCGTCGAACTCGGAGCCCCAGC 1825126 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TT 23342 | ||| || ||| || | || | || || | | |||||| | | | || || Sbjct 1825127 ACTCGTGCAAGCCAGGGGCTTCATTGGGGCAGAACAAACTCCA---TTCGCCGTTGGATT 1825183 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 | ||||| |||| || | ||||| ||||| | || ||||||| ||||||||||| Sbjct 1825184 CGACGCGCTTCATGAACAAGTCCGGGATCCACATGGCATAGAACAAGTCGCGGGCGCGGT 1825243 Query 23403 CCTCCTCTTTGCCGGTGTTCTT--------------TTTCAAATCCAAAAAGT------- 23441 ||| |||||| ||| || ||| ||| ||||| || Sbjct 1825244 GGAGCTCGTTGCCGTGGTTTTTCTTGAGCTCCAAGAATTCTAATGCAAAATGTTAAGAAC 1825303 Query 23442 ---------------------CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAA 23480 | || | ||| || ||||| || || | ||| | ||||| Sbjct 1825304 AACGTGGATGGGGAGTCGTACCAAAAATGTCAGCGTGCCAAGGTTCCAAGTACATGGCAA 1825363 Query 23481 ACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTC 23540 ||| ||| || ||| ||||| || ||||| ||||||||||||| |||| |||| | Sbjct 1825364 ACGACCCCTTTCGCTTTCCACCGCCTTGGTCGACATAACGGGCCGTGTCGTTGAACACGC 1825423 Query 23541 TTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA----ACCT 23596 ||||| || | || ||||| || | ||| | || | ||||| | || Sbjct 1825424 GAAGCATGGGAATGATCCCGTTCGAAGACCCG--TTCGTTC------CTCGAATGTAGCT 1825475 Query 23597 TTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 || || || | |||||| | || | ||| || || || || | || || || Sbjct 1825476 GTTCGTGGCGCGGATGTTGTGGATGTTCACACCGATTCCACCAGCCCACTTGGAAATGCA 1825535 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 |||||| | ||||| |||||||| ||||| || || ||| ||||| | | | ||| Sbjct 1825536 CGCGCAGTTTTTCAATGTGTCGTAAATGCCTTCAATCGAGTCGTCTTTCATGGACAGCAA 1825595 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 || ||||| || | ||| | ||||| |||| ||||| || || | ||||| Sbjct 1825596 AAAGCACGACGAGAGTTGAGGGCGCGGCGTGCCGGCATTGAACAACGTGGGTGTTGCGTG 1825655 Query 23773 CGTAAAGTATCCATT-CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 |||||||| | ||| ||||| | ||| ||| | | ||| || ||||| ||| Sbjct 1825656 GGTAAAGTA-CAATTGGGACATGTACTCGTAGGTGGTCAAGACGGACTCGATGTCATCTT 1825714 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 ||| || || | || || ||||| ||||||| ||| |||| Sbjct 1825715 TGTGGATGCCCACAGCCACACGCATAATCATGTGTTGGGGTC 1825756 >seq18 Length=1130244 Score = 131 bits (144), Expect = 1e-25 Identities = 577/897 (64%), Gaps = 45/897 (5%) Strand=Plus/Minus Query 57519 TTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAAC 57578 ||||| || ||||| || || || | || ||||| || | | ||| | ||| | Sbjct 427674 TTGCA-GAAAATCCGAACAGGTTCGTGCTCTTCCCGATCCAACACGCCGACGTGTGGGAG 427616 Query 57579 ATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT 57638 |||||||||||||| ||||| || ||||| | ||||| ||||| || | ||| Sbjct 427615 ATGTACAAAAAGGCGGAAGCGAGCTTCTGGACAGCGGAAGAGCTAGACTTGGTGCACGAT 427556 Query 57639 CTGAGCGATTGGGATTCCCTCAAAGAATCTGAGA--GAAATTTTATTAAACAC----GTG 57692 | |||| |||| |||| | || | ||| ||| || | ||| ||| Sbjct 427555 CAACGCGACTGGG------TCAAGCTTACCGACAACGAACGTTTCTTCATCACGCATGTG 427502 Query 57693 TTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA 57752 ||||||| || ||||| || || || || ||||| || | | ||| | ||| Sbjct 427501 CTGGCGTTCTTTGCCGCGAGTGACGGGATCGTGAACGAAAACCTCG-CGATGAACTTTAG 427443 Query 57753 CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAA 57811 ||| ||||| |||||| | || || | ||||| ||||| || || | |||||||| || Sbjct 427442 CAATGAAGTACAAGTGCCTGAAGCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAA 427383 Query 57812 CGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA 57871 | | || || ||| |||| ||||| |||||||| |||||| | ||||| | ||| ||| Sbjct 427382 CATTCACTCTGAAGTGTACTCGCTCCTCATCGACACGTACATCAAGGA-TGCCACG-GAA 427325 Query 57872 ACGTAGACTGTTCAAC--GCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTG 57928 | | | || | | || || || || || ||| | | || | ||| || || Sbjct 427324 AAGGACCGGGTCCTGCGTGCCATTGACACGATCCCCTGTGTCCGACGCAAAGCCA-CCTG 427266 Query 57929 GTCAATCAAATG----GATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 | | | || || || || ||||| || | | ||| || | | | || | Sbjct 427265 GGCTTTGAAGTGGTGCGACAATAAGCG----TGCTGCCTACGCTGAACGTATCGTTGCCT 427210 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATTTTGGATGAAG 58043 | ||||| |||||||| || ||||| || ||| | | ||| | || || ||| | ||| Sbjct 427209 TTGCCGCTGTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGC-TCCATCTTCTGGCTCAAG 427151 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 || || || || ||||| || || | || ||||| | || || |||||||| ||| Sbjct 427150 AAGCGAGGTCTAATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAGGT 427091 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA----ACCGACGCG 58159 || || || ||||||||| | |||||||| | | ||||| || ||||| Sbjct 427090 CTGCACTGCGACTTTGCGTGCTTGATGTACTCGAAGCTCGTCAACAAGTTGTCCGAC--- 427034 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 | |||||| || || || ||| || |||||||| || || ||||||||| || Sbjct 427033 -CAGCGCATCCACGAGATCGTCGGCGACGCCGTCGCGATTGAGAAGCAGTTTGTCAGTGA 426975 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 ||| || |||| | | || |||||| | |||| ||||||||||||| Sbjct 426974 GAGCCTGCCCGTGGAGCTCATTGGCATGAACTCGTCCCTCATGTGCGAGTACATTGAGTT 426915 Query 58280 TGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC---GTCATTACAACACGAAAAA 58336 || || | | | |||||| | || | | | ||| | || || Sbjct 426914 CTGCGCGGATCGCC---TCCTCGAAGCCCTCGGCGCCCCCAAGCTGTACGCGGCCAAGAA 426858 Query 58337 TCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 ||||| || | ||| | ||||||||||| |||||||||| ||||||||||| || Sbjct 426857 CCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTTTTCGAGAA 426801 >seq11 Length=1510989 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| |||||||| |||||| |||| || || || ||||| | ||||| || || Sbjct 1070139 AAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGCC 1070198 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||| |||| | |||||||| | || |||||||||||| | ||||| || Sbjct 1070199 TTCGGACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGA 1070258 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| | || || || ||||| ||| | ||||| || ||||||| || Sbjct 1070259 CCAGCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAGCGACTA 1070318 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| |||||||| | || |||| || | ||| | || ||| Sbjct 1070319 CAACATCCAAAAGGAATCGACGTTGCACTTGGTTCTCCGCCTGCGTGGGGGT 1070370 >seq27 Length=843962 Score = 116 bits (128), Expect = 3e-21 Identities = 170/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| |||| || ||||| ||||| | || || ||||| || Sbjct 479754 CATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATC 479813 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || | || ||||||||||||| | || || || || Sbjct 479814 CGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCA 479873 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || || || ||||| || |||||||| || ||||||| || || Sbjct 479874 GCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTACAA 479933 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 ||| ||||| |||||||| | || |||| || | ||| | || ||| ||||||| Sbjct 479934 CATCCAAAAGGAATCGACCTTGCACTTGGTGCTCCGCCTGCGTGGTGGTGGCAAGAAGCG 479993 >seq76 Length=128956 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| || || || ||||||| || ||||| Sbjct 45102 CATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTC 45043 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| |||| || |||||||||||| | || || || || Sbjct 45042 CGACTCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 44983 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || || || ||||| |||||||| || || ||||||| || || Sbjct 44982 GCAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTACAA 44923 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || ||||| || ||| |||| ||| Sbjct 44922 TATCCAGAAGGAGTCGACCCTGCATTTGGTTCTT 44889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763719829520