Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq18 109 1e-18 >seq18 Length=1130244 Score = 109 bits (120), Expect = 1e-18 Identities = 126/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 101906 GCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTT-TAGTGGTGCATTCGC 101964 || |||| || ||||||||||| || || ||||| |||||||| | | ||| | ||| Sbjct 427228 GCTGAACGTATCGTTGCCTTTGCCGCTGTCGAAGGCATCTTCTTCTCGGGGT-CGTTCTG 427170 Query 101965 ATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTT 102024 ||||| |||||| ||||||| | ||| | |||| ||| | ||| ||| || || | Sbjct 427169 CTCCATCTTCTGGCTCAAGAAGCGAGGTCTAATGCCGGGTTTGTCCTTCTCGAACGAACT 427110 Query 102025 CATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGT 102071 ||||||| | ||||||||||| || |||||||||| ||| || ||| Sbjct 427109 CATTTCTCGCGACGAAGGTCTGCACTGCGACTTTGCGTGCTTGATGT 427063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577901379355