Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11 120 3e-22 seq27 107 2e-18 seq76 86.0 6e-12 >seq11 Length=1510989 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | ||| || || ||||| ||||| || ||||||| |||| ||||| Sbjct 1070352 AACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTC 1070293 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || || ||| |||||| || ||||| || || || |||||||| ||||| Sbjct 1070292 GAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 1070233 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| |||||||| | | || | | ||| | |||||||| || | || | ||||| Sbjct 1070232 GATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 1070173 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || || ||||| || |||||| Sbjct 1070172 CCCAGTCAAAGTCTTGACGAAAATCTGCATA 1070142 >seq27 Length=843962 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || ||||| ||||| || ||||||| |||| ||||| Sbjct 479963 ACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCC 479904 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || ||| |||| || ||||||||||| || || |||||||| ||||| | Sbjct 479903 AATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGG 479844 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||||| || | | || | | ||||| || ||||| || | || | || || Sbjct 479843 ATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTA 479784 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||||||| || ||||| |||||||| Sbjct 479783 CCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq76 Length=128956 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || || | || ||||| || || || || || ||||||| |||| || || Sbjct 44892 AACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTC 44951 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| || || ||| |||| || ||||||||||| ||||| || ||||| ||||| Sbjct 44952 CAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 45011 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 || || || || | | || | | ||||| |||||||| || | || | ||||| Sbjct 45012 AATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTT 45071 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || || || || || ||||| Sbjct 45072 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061017415200