Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18 212 9e-50 >seq18 Length=1130244 Score = 212 bits (234), Expect = 9e-50 Identities = 429/628 (68%), Gaps = 13/628 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||||||| || || || |||||||||||||| ||||| | | ||| |||||||| || | Sbjct 427063 ACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGA 427122 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | | | || |||||||| || ||||| || ||||| || ||||| ||| || ||||| Sbjct 427123 AGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGA-GCAGAACGACCCC 427181 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||| ||||| || |||||||||||||| | | || | || || | Sbjct 427182 GAGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGC 427241 Query 50131 TCA-TGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | | ||| |||||| |||||| ||| || | ||||| || ||||| || Sbjct 427242 TTATTGTCGCACCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCA 427301 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 |||||| | || || ||||| | ||| || | || || ||||| | || Sbjct 427302 ATGGCACGCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGC 427361 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 |||| ||| || |||||||| |||||||| ||||| || |||||||| || | || Sbjct 427362 GAGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCT 427421 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGT 50365 || | | || ||||| | | ||| ||||| || | ||||| ||||| || |||| Sbjct 427422 TCAGGCACTTGTACTTCATTGCTAAA--GTTCATCGCGAGGTTTTCGTTCACGATCCCGT 427479 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 |||| || ||||| ||||||| ||||| | || || ||||||| || || | Sbjct 427480 CACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCT 427539 Query 50426 TATTCCAAT--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 | ||| | | ||| ||| | | |||| |||||| ||||||| || || Sbjct 427540 TGACCCAGTCGCGTTG--ATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGC 427597 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || |||||||| ||||| | ||| | ||| | |||||| ||||| | || || || Sbjct 427598 TTCCGCCTTTTTGTACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCACGAACCT 427657 Query 50544 ATTTGGATTTGGTGCAAGGATCGGTTCC 50571 || |||||| |||||||| ||| ||| Sbjct 427658 GTTCGGATTTTCTGCAAGGAACGGCTCC 427685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264481408840