Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq76 93.3 3e-14 >seq76 Length=128956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || |||||| || | |||||| ||| ||| || || | || ||| Sbjct 44893 ACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTCC 44952 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || || ||||||||||| || | ||| || ||||| | || | ||||| || || ||| Sbjct 44953 AACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTC-CTG 45011 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| || ||||| || ||| | |||| | ||| ||||| | ||| || || || Sbjct 45012 AATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTT 45071 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || || ||||| || ||||| Sbjct 45072 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367364339898