Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18 188 1e-42 >seq18 Length=1130244 Score = 188 bits (208), Expect = 1e-42 Identities = 424/628 (68%), Gaps = 13/628 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||||||| || || || |||||||||||||| || || | | ||| | |||||| || | Sbjct 427063 ACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGA 427122 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | | | || |||||||| || ||||| || ||||| || || || ||| || || || Sbjct 427123 AGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGA-GCAGAACGACCCC 427181 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| ||||| || || |||||||||| | | || | || | |||| Sbjct 427182 GAGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGC 427241 Query 42236 TCAT-GTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || || | ||||| |||||| ||| || | ||||| || ||||| || Sbjct 427242 TTATTGTCGCACCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCA 427301 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 |||||| | || || ||||| | ||| || | || || ||||| | || Sbjct 427302 ATGGCACGCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGC 427361 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||| ||| || |||||||| |||||||| ||||| || |||||||| || | ||| Sbjct 427362 GAGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCT 427421 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 || | || |||||||| | | ||| ||||| || | ||||||||||| || |||| Sbjct 427422 TCAGGCACTTGTACTTCATTGCTAAA--GTTCATCGCGAGGTTTTCGTTCACGATCCCGT 427479 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 |||| || ||||| ||||||| ||||| | || || | ||||| || | | Sbjct 427480 CACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCT 427539 Query 42531 TATTCCAAT--CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 | ||| | | ||| ||| | | |||| ||||| | ||||| || || Sbjct 427540 TGACCCAGTCGCGTTG--ATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGC 427597 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 ||| |||||||| ||||| | ||| | || | ||| || ||||| | || || || Sbjct 427598 TTCCGCCTTTTTGTACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCACGAACCT 427657 Query 42649 ATTTGGATTTGGTGCAAGGATCGGTTCC 42676 || |||||| |||||||| ||| ||| Sbjct 427658 GTTCGGATTTTCTGCAAGGAACGGCTCC 427685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135164775560