Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq27 107 2e-18 seq76 82.4 8e-11 >seq27 Length=843962 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||| ||||||| |||| ||||| | ||| || || Sbjct 479951 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCCAATTGCTTGCCG 479892 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || ||||||||||| || || |||||||| ||||| || ||||| || Sbjct 479891 GCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC 479832 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || ||| | ||||| || || | || | || || || ||||| || Sbjct 479831 ACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTACCCGTCAACGTC 479772 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 479771 TTGACGAAGATTTGCAT 479755 >seq76 Length=128956 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||| | || || || || || || ||||| ||||||| |||| || || Sbjct 44892 AACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTC 44951 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | || || || ||| |||| || ||||||||||| ||||| || ||||| ||||| Sbjct 44952 CAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 45011 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || || | | || | || ||| | || || || || | || | ||||| Sbjct 45012 AATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTT 45071 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| | || || || || || ||||| Sbjct 45072 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011351575920