Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 120 5e-22 >seq18 Length=1130244 Score = 120 bits (132), Expect = 5e-22 Identities = 441/676 (65%), Gaps = 41/676 (6%) Strand=Plus/Minus Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 |||||| ||||| ||||| || ||||||||| | ||||| ||| ||||||| || Sbjct 427415 GTGCTTCTACGGGTTCCAGATTGCCATTGAGAACATTCACTCTGAAGTGTACTCGCTCCT 427356 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAACGCAATCGAC 125348 || |||| |||||| ||| || ||| ||| || | || | || || ||| Sbjct 427355 CATCGACACGTACATCAAGGAT--GCCACGGAAAAGGACCGGGTCCTGCGTGCCATTGAC 427298 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 ||| | || | | | || || || |||| | |||| ||| | | ||| Sbjct 427297 ACGATCCCCTGTGTCCGACGCAAAGCCACCTGGGCTTTGAAGTGGTGCGA---CAATAAG 427241 Query 125409 T---CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || | ||||| || | | || || || ||||| || || ||||||||||| ||| Sbjct 427240 CGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCGCTGTCGAAGGCATCTTCTTCTCG 427181 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | ||| ||| ||||||| |||||||||||||| || || ||||| || || | Sbjct 427180 GGGTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGAGGTCTAATGCCGGGTTTGTCCTT 427122 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT- 125583 | ||||| | || ||||| ||||| || || ||||| |||||||| | ||| Sbjct 427121 CTCGAACGAACTCATTTCTCGCGACGAAGGTCTGCACTGCGACTTTGCGTGCTTGATGTA 427062 Query 125584 TTCGCAACTATCTGCGTC-CCGAGT--GCAGATCCAGCGATGAAAAGGTCATCAAC---A 125637 ||| | || |||| | ||| | || |||||| |||| || | Sbjct 427061 CTCGAAGCT-----CGTCAACAAGTTGTCCGA-CCAGCG----------CATCCACGAGA 427018 Query 125638 TTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGC 125696 | || ||| ||||| ||| || | ||||| | | || ||| || || ||| Sbjct 427017 TCGTCGGCGACGCCGTCGCGATTGAGAAGCAGTTTGTCAGTGAGAGCCTGCCCGTGGAGC 426958 Query 125697 ATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTA 125756 | ||||||||||||| || |||||||||||||| ||||| || ||||| || Sbjct 426957 -TCATTGGCATGAACTCGTCCCTCATGTGCGAGTACATTGAGTTCTGCGCGGATCGCCTC 426899 Query 125757 CTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 || | | | | || |||| | ||| |||||||| || || || | ||| | Sbjct 426898 CTCGAAGCCCTCGGCGCCCCCAAGCTGTACGCGGCCAAGAACCCGTTCGACTGGATGGAC 426839 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACA--AAC 125874 | || || || |||| ||||||||||||||||||||| ||| ||||||||| || Sbjct 426838 ATGATCTCGCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGTACAGCAAA 426779 Query 125875 GCTACGGTGTCGGTGT 125890 || ||||| ||||| Sbjct 426778 TCT--GGTGTTGGTGT 426765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054744381560